I have the same problem in my Mac (mountain lion) Manuel
2013/8/6 Patrick Freeman <[email protected]> > Hi Victor, > > To answer your first question, yes, the MCP option is available for use. > So we're good there. As for SciPy, things get a little hairy. When I ask > QGIS to import SciPy I get the following read-out: > > Traceback (most recent call last): > > File "<input>", line 1, in <module> > > File > "/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py", > line 309, in _import > > mod = _builtin_import(name, globals, locals, fromlist, level) > > ImportError: No module named scipy > > > I assume this means I don't have the SciPy package installed in the > correct folder. I know this sounds super basic, but can you tell me how I > should install SciPy so that QGIS can read it? I just don't want to screw > up my entire QGIS program on accident. I have downloaded the SciPy 0.11.0 > version but Jorge, you thought that there was an issue with the plugin > requiring the 0.12 version yes? Should I give the 0.11.0 version a shot > with any instructions that you might provide or should I just try to > install the 0.12 version. Should I also plan to download the Numpy package > as well? > > > Also, I did attempt your other fix of checking and unchecking the options > box in Sextante and it doesn't make the KDE option appear unfortunately. > > > Thanks again guys, I really appreciate it and so do the rhinos! > > > Patrick > > On Tue, Aug 6, 2013 at 12:00 PM, <[email protected]> wrote: > >> Send AniMov mailing list submissions to >> [email protected] >> >> To subscribe or unsubscribe via the World Wide Web, visit >> http://lists.faunalia.it/cgi-bin/mailman/listinfo/animov >> or, via email, send a message with subject or body 'help' to >> [email protected] >> >> You can reach the person managing the list at >> [email protected] >> >> When replying, please edit your Subject line so it is more specific >> than "Re: Contents of AniMov digest..." >> >> >> Today's Topics: >> >> 1. Assistance with Animov Plugin on QGIS for Mac OSX >> (Patrick Freeman) >> 2. Re: Assistance with Animov Plugin on QGIS for Mac OSX >> (Victor Gonzalez) >> 3. Re: Assistance with Animov Plugin on QGIS for Mac OSX >> (Jorge Arevalo) >> >> >> ---------------------------------------------------------------------- >> >> Message: 1 >> Date: Mon, 5 Aug 2013 16:00:34 +0200 >> From: Patrick Freeman <[email protected]> >> To: [email protected] >> Subject: [AniMov] Assistance with Animov Plugin on QGIS for Mac OSX >> Message-ID: >> < >> cafuu_5nqa53bkqagmregju1krgehf358gwur1dcgdut1cdz...@mail.gmail.com> >> Content-Type: text/plain; charset="iso-8859-1" >> >> My name is Patrick Freeman and I'm currently a master's student from >> Stanford University interning with a conservation research organization in >> South Africa. I've been tasked with using a database of VHF telemetry data >> and GPS collar readings from the regional population of black rhinos to >> develop a working knowledge of their home ranges, home range overlap and >> habitat usage. The organization here employs QGIS to do all of their map >> work and thus I've learned how to use the program as much as I can over >> the >> past month. However, I'm still completely blind to the workings of Python, >> etc. >> >> I am desperately trying to get the kernel density estimation tool in the >> Animove plugin in the Sextante toolbox to work but it simply won't appear. >> I've read plenty on various different sites that this is a result of a >> missing SciPy package. I have downloaded the SciPy package for Mac but >> don't know how to install it properly to my QGIS directory. I'm currently >> using a Mac OSx (Lion) and I'm working with QGIS 1.8. I *believe* my >> Python >> is version 2.7, but I'm not entirely sure how to check it properly (again, >> I'm new to QGIS and the world of Python). I have spent several weeks >> combing the Internet for help with this issue to no avail despite there >> being plenty of information about how to make this plugin work for the >> Windows version of QGIS. I was wondering if I went straight to the source >> I >> could potentially get a little assistance with getting the KDE to be >> functional for the plugin? Paolo has graciously directed me to this >> conversation ( >> http://lists.faunalia.it/pipermail/animov/2013-August/001113.html) but it >> is again more focused on the Windows installation process. I am just >> worried that if I try to reinstall a developer version of QGIS that I'll >> screw up a bunch of the work that I've already done on this project/make >> my >> computer implode so I want to make sure what I'm doing is correct. This >> black rhino project is of urgent importance to the conservation managers >> in >> this area given the spike in rhino poaching incidents in the area so I >> thank you in advance for any and all support! >> >> Cheers, >> >> Patrick Freeman >> >> -- >> Patrick T. Freeman >> Stanford University >> Head Teaching Assistant - Stanford University Earth Systems Program >> B.S. Candidate '13, M.S. Candidate '14 | Earth Systems >> -------------- next part -------------- >> An HTML attachment was scrubbed... >> URL: < >> http://lists.faunalia.it/pipermail/animov/attachments/20130805/0c15fc20/attachment-0001.html >> > >> >> ------------------------------ >> >> Message: 2 >> Date: Tue, 6 Aug 2013 09:33:01 +0200 >> From: Victor Gonzalez <[email protected]> >> To: Animal Movement <[email protected]> >> Subject: Re: [AniMov] Assistance with Animov Plugin on QGIS for Mac >> OSX >> Message-ID: >> <CAKMYNK= >> [email protected]> >> Content-Type: text/plain; charset="iso-8859-1" >> >> Hi Patrick, >> >> I never used Mac OS, so I'm not sure I can help, but I'll try. Does the >> "Minimum Convex Polygon" algorithm appear in the SEXTANTE toolbox? >> >> If so, AniMove is installed and configured correctly, but scipy may not be >> installed with the required version and thus the "Kernel Density >> Estimation" algorithm does not appear. To check your scipy version, you >> can >> try this: open the Plugins -> Python console and write this: >> >> >>> import sys >> >>> sys.version >> (check Python version) >> >>> import scipy >> >>> scipy.version.version >> (check scipy version) >> >>> import numpy >> >>> numpy.version.version >> (check numpy version) >> >> If no AniMove algorithm appears in the SEXTANTE toolbox, you can try this: >> open the Analysis -> SEXTANTE options and configuration and check the box >> under AniMove (MCP and Kernel analysis UD). >> If it is already checked, try to uncheck and check it again. >> >> If the AniMove (MCP and Kernel analysis UD) option does not appear in the >> SEXTANTE options and configuration, then the AniMove plugin is not >> installed correctly. >> >> Please, let us know if you find something. >> Regards, >> V?ctor. >> >> >> >> 2013/8/5 Patrick Freeman <[email protected]> >> >> > My name is Patrick Freeman and I'm currently a master's student from >> > Stanford University interning with a conservation research organization >> in >> > South Africa. I've been tasked with using a database of VHF telemetry >> data >> > and GPS collar readings from the regional population of black rhinos to >> > develop a working knowledge of their home ranges, home range overlap and >> > habitat usage. The organization here employs QGIS to do all of their map >> > work and thus I've learned how to use the program as much as I can over >> the >> > past month. However, I'm still completely blind to the workings of >> Python, >> > etc. >> > >> > I am desperately trying to get the kernel density estimation tool in the >> > Animove plugin in the Sextante toolbox to work but it simply won't >> appear. >> > I've read plenty on various different sites that this is a result of a >> > missing SciPy package. I have downloaded the SciPy package for Mac but >> > don't know how to install it properly to my QGIS directory. I'm >> currently >> > using a Mac OSx (Lion) and I'm working with QGIS 1.8. I *believe* my >> Python >> > is version 2.7, but I'm not entirely sure how to check it properly >> (again, >> > I'm new to QGIS and the world of Python). I have spent several weeks >> > combing the Internet for help with this issue to no avail despite there >> > being plenty of information about how to make this plugin work for the >> > Windows version of QGIS. I was wondering if I went straight to the >> source I >> > could potentially get a little assistance with getting the KDE to be >> > functional for the plugin? Paolo has graciously directed me to this >> > conversation ( >> > http://lists.faunalia.it/pipermail/animov/2013-August/001113.html) but >> it >> > is again more focused on the Windows installation process. I am just >> > worried that if I try to reinstall a developer version of QGIS that I'll >> > screw up a bunch of the work that I've already done on this >> project/make my >> > computer implode so I want to make sure what I'm doing is correct. This >> > black rhino project is of urgent importance to the conservation >> managers in >> > this area given the spike in rhino poaching incidents in the area so I >> > thank you in advance for any and all support! >> > >> > Cheers, >> > >> > Patrick Freeman >> > >> > -- >> > Patrick T. Freeman >> > Stanford University >> > Head Teaching Assistant - Stanford University Earth Systems Program >> > B.S. Candidate '13, M.S. Candidate '14 | Earth Systems >> > >> > >> > >> > _______________________________________________ >> > AniMov mailing list >> > [email protected] >> > http://lists.faunalia.it/cgi-bin/mailman/listinfo/animov >> > >> > >> -------------- next part -------------- >> An HTML attachment was scrubbed... >> URL: < >> http://lists.faunalia.it/pipermail/animov/attachments/20130806/328dee31/attachment-0001.html >> > >> >> ------------------------------ >> >> Message: 3 >> Date: Tue, 6 Aug 2013 11:08:08 +0200 >> From: Jorge Arevalo <[email protected]> >> To: Animal Movement <[email protected]> >> Subject: Re: [AniMov] Assistance with Animov Plugin on QGIS for Mac >> OSX >> Message-ID: >> < >> cac4kd+fcnfpyhcfnkecgvygcd7xir2d5xtvqqh0domzbuoz...@mail.gmail.com> >> Content-Type: text/plain; charset=ISO-8859-1 >> >> Hello, >> >> As Mac OS user, I have the same problem. I'm almost 100% secure is a >> problem with scipy version. I think the plugin requires scipy 0.12 >> and, by default, 0.11.1 is installed. I'm investigating it, to include >> a Mac OS installation guide in the official documentation. I'll keep >> you updated. >> >> Best regards, >> Jorge >> >> On Tue, Aug 6, 2013 at 9:33 AM, Victor Gonzalez >> <[email protected]> wrote: >> > Hi Patrick, >> > >> > I never used Mac OS, so I'm not sure I can help, but I'll try. Does the >> > "Minimum Convex Polygon" algorithm appear in the SEXTANTE toolbox? >> > >> > If so, AniMove is installed and configured correctly, but scipy may not >> be >> > installed with the required version and thus the "Kernel Density >> Estimation" >> > algorithm does not appear. To check your scipy version, you can try >> this: >> > open the Plugins -> Python console and write this: >> > >> > >>> import sys >> > >>> sys.version >> > (check Python version) >> > >>> import scipy >> > >>> scipy.version.version >> > (check scipy version) >> > >>> import numpy >> > >>> numpy.version.version >> > (check numpy version) >> > >> > If no AniMove algorithm appears in the SEXTANTE toolbox, you can try >> this: >> > open the Analysis -> SEXTANTE options and configuration and check the >> box >> > under AniMove (MCP and Kernel analysis UD). >> > If it is already checked, try to uncheck and check it again. >> > >> > If the AniMove (MCP and Kernel analysis UD) option does not appear in >> the >> > SEXTANTE options and configuration, then the AniMove plugin is not >> installed >> > correctly. >> > >> > Please, let us know if you find something. >> > Regards, >> > V?ctor. >> > >> > >> > >> > 2013/8/5 Patrick Freeman <[email protected]> >> >> >> >> My name is Patrick Freeman and I'm currently a master's student from >> >> Stanford University interning with a conservation research >> organization in >> >> South Africa. I've been tasked with using a database of VHF telemetry >> data >> >> and GPS collar readings from the regional population of black rhinos to >> >> develop a working knowledge of their home ranges, home range overlap >> and >> >> habitat usage. The organization here employs QGIS to do all of their >> map >> >> work and thus I've learned how to use the program as much as I can >> over the >> >> past month. However, I'm still completely blind to the workings of >> Python, >> >> etc. >> >> >> >> I am desperately trying to get the kernel density estimation tool in >> the >> >> Animove plugin in the Sextante toolbox to work but it simply won't >> appear. >> >> I've read plenty on various different sites that this is a result of a >> >> missing SciPy package. I have downloaded the SciPy package for Mac but >> don't >> >> know how to install it properly to my QGIS directory. I'm currently >> using a >> >> Mac OSx (Lion) and I'm working with QGIS 1.8. I *believe* my Python is >> >> version 2.7, but I'm not entirely sure how to check it properly >> (again, I'm >> >> new to QGIS and the world of Python). I have spent several weeks >> combing the >> >> Internet for help with this issue to no avail despite there being >> plenty of >> >> information about how to make this plugin work for the Windows version >> of >> >> QGIS. I was wondering if I went straight to the source I could >> potentially >> >> get a little assistance with getting the KDE to be functional for the >> >> plugin? Paolo has graciously directed me to this conversation >> >> (http://lists.faunalia.it/pipermail/animov/2013-August/001113.html) >> but it >> >> is again more focused on the Windows installation process. I am just >> worried >> >> that if I try to reinstall a developer version of QGIS that I'll screw >> up a >> >> bunch of the work that I've already done on this project/make my >> computer >> >> implode so I want to make sure what I'm doing is correct. This black >> rhino >> >> project is of urgent importance to the conservation managers in this >> area >> >> given the spike in rhino poaching incidents in the area so I thank you >> in >> >> advance for any and all support! >> >> >> >> Cheers, >> >> >> >> Patrick Freeman >> >> >> >> -- >> >> Patrick T. Freeman >> >> Stanford University >> >> Head Teaching Assistant - Stanford University Earth Systems Program >> >> B.S. Candidate '13, M.S. Candidate '14 | Earth Systems >> >> >> >> >> >> >> >> _______________________________________________ >> >> AniMov mailing list >> >> [email protected] >> >> http://lists.faunalia.it/cgi-bin/mailman/listinfo/animov >> >> >> > >> > >> > _______________________________________________ >> > AniMov mailing list >> > [email protected] >> > http://lists.faunalia.it/cgi-bin/mailman/listinfo/animov >> > >> >> >> >> -- >> Jorge Ar?valo >> http://geomati.co >> >> >> ------------------------------ >> >> Subject: Digest Footer >> >> _______________________________________________ >> AniMov mailing list >> [email protected] >> http://lists.faunalia.it/cgi-bin/mailman/listinfo/animov >> >> >> ------------------------------ >> >> End of AniMov Digest, Vol 90, Issue 3 >> ************************************* >> > > > > -- > Patrick T. Freeman > Stanford University > Head Teaching Assistant - Stanford University Earth Systems Program > B.S. Candidate '13, M.S. Candidate '14 | Earth Systems > > > > _______________________________________________ > AniMov mailing list > [email protected] > http://lists.faunalia.it/cgi-bin/mailman/listinfo/animov > > -- *Manuel Spínola, Ph.D.* Instituto Internacional en Conservación y Manejo de Vida Silvestre Universidad Nacional Apartado 1350-3000 Heredia COSTA RICA [email protected] [email protected] Teléfono: (506) 2277-3598 Fax: (506) 2237-7036 Personal website: Lobito de río <https://sites.google.com/site/lobitoderio/> Institutional website: ICOMVIS <http://www.icomvis.una.ac.cr/>
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