---------- Forwarded message ---------- From: Andrzej Zielezinski <[EMAIL PROTECTED]> Date: Thu, Nov 13, 2008 at 4:10 PM Subject: Loading data - computational analysis - SIM4 To: [email protected]
Hello everyone, Firstly, Apollo is a great tool for genome annotation and for gathering results from different analysises and I would like to thank authors for a such helpful tool. There is one thing I can't cope with. When I load data from SIM4's output file, I've noticed that some units of this loaded SIM4 feature are missing in the Apollo main window. To be understood here I employed some example: Results from SIM4 analysis: seq1 = genomic_dna.fasta, 3046 bp seq2 = ests_ppatens.fasta.screen.cap.contigs (Contig1), 2058 bp 142-271 (194-323) 81% == 494-1132 (396-1037) 83% <- 1304-1718 (1038-1452) 81% -> 1971-2053 (1453-1535) 90% seq1 = genomic_dna.fasta, 3046 bp seq2 = ests_ppatens.fasta.screen.cap.contigs (Contig2), 841 bp (complement) 1597-1718 (8-129) 84% -> 1971-2053 (130-212) 90% When I load this file and query file also (with genomic sequence) Apollo shows only two tiers: 1597-1718 (8-129) 84% -> and 1971-2053 (130-212) 90%. What has be-come of other elements that should have been shown? Above mentioned situation happens with different SIM4's results. Thank you in advance! Kindest regards, Andrzej Zielezinski
sim4.out
Description: Binary data
genomic_dna.fasta
Description: Binary data
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