Hi
I am pretty sure this is an error from my data.. but how do i find out
more info about what went wrong?
Exception in thread "Thread-6" java.lang.NullPointerException
at
org.ensembl.driver.impl.CoordinateSystemAdaptorImpl.getMappingPath(CoordinateSystemAdaptorImpl.java:217)
at
org.ensembl.driver.impl.AssemblyMapperAdaptorImpl.fetchByCoordSystems(AssemblyMapperAdaptorImpl.java:106)
at
org.ensembl.driver.impl.LocationConverterImpl.convert(LocationConverterImpl.java:353)
at
org.ensembl.driver.impl.LocationConverterImpl.convert(LocationConverterImpl.java:449)
at
org.ensembl.driver.impl.BaseFeatureAdaptorImpl.fetchAllByConstraint(BaseFeatureAdaptorImpl.java:733)
at
org.ensembl.driver.impl.BaseFeatureAdaptorImpl.fetchAllByConstraint(BaseFeatureAdaptorImpl.java:682)
at
org.ensembl.driver.impl.BaseFeatureAdaptorImpl.fetch(BaseFeatureAdaptorImpl.java:1360)
at
org.ensembl.driver.impl.GeneAdaptorImpl.fetch(GeneAdaptorImpl.java:244)
at apollo.dataadapter.ensj.DataFetcher.addGenes(DataFetcher.java:74)
at apollo.dataadapter.ensj.EnsJAdapter.getResults(EnsJAdapter.java:420)
at
apollo.dataadapter.ensj.EnsJAdapter.getCurationSet(EnsJAdapter.java:149)
at
apollo.dataadapter.ensj.EnsJAdapterGUI.doOperation(EnsJAdapterGUI.java:52)
at
org.bdgp.swing.widget.DataAdapterChooser.doCommitWithExceptions(DataAdapterChooser.java:361)
at
apollo.main.DataLoader$ApolloAdapterChooser.doCommit(DataLoader.java:740)
at
org.bdgp.swing.widget.DataAdapterChooser$CommitRunnable.run(DataAdapterChooser.java:136)
at java.lang.Thread.run(Unknown Source)
--
Kevin Lam
Bioinformatics Officer
Comparative Genomics Lab
Institute of Molecular and Cell Biology, A*STAR Singapore.
61 Biopolis Drive,Proteos,Singapore 138673
tel: 6586 9569
http://www.imcb.a-star.edu.sg/php/venkatesh.php
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