Hey Scott,
Try using "BLASTN" as the resulttype instead of "BLASTN:BLASTN".
Cheers,
Ed
On Tue, 9 Jun 2009, Scott Cain wrote:
Hi Ed,
How does the tiers file field "resulttype" map to Chado?
Specifically, I'm trying to use the conf below to extract blast
results from chado where the analysis table row for these results look
like this:
analysis_id | name | program | programversion | sourcename
-------------+--------+---------+----------------+------------
44 | BLASTN | BLASTN | null |
[Tier]
tiername : BLASTN
visible : true
expanded : true
[Type]
tiername : BLASTN
typename : BLASTN:BLASTN
resulttype : BLASTN:BLASTN
color : 204,0,51
usescore : false
minscore : 0
maxscore : 100
glyph : DrawableResultFeatureSet
column : SCORE
column : expect
column : query_frame
column : GENOMIC_RANGE
column : MATCH_RANGE
column : GENOMIC_LENGTH
column : MATCH_LENGTH
sortbycolumn : GENOMIC_RANGE
groupby : HOMOLOGY
weburl :
freshdate: 26-NOV-2007
Thanks,
Scott
--
------------------------------------------------------------------------
Scott Cain, Ph. D. scott at scottcain dot net
GMOD Coordinator (http://gmod.org/) 216-392-3087
Ontario Institute for Cancer Research
_______________________________________________
apollo mailing list
[email protected]
http://mail.fruitfly.org/mailman/listinfo/apollo
