Hi Alex,
There have been some fixes to the GFF3 adapter, but I'm not sure
whether they'll resolve the issue you're having. Your best bet
is to check out the code from the SourceForge CVS repository:
<checkout>
cvs -d:pserver:[email protected]:/cvsroot/gmod login
cvs -z3 -d:pserver:[email protected]:/cvsroot/gmod co -P
apollo</checkout>
You can find the GFF3Adapter.java class in:
$APOLLO_CHECKOUT/src/java/apollo/dataadapter/GFF3
Let me know if you have any issues.
Cheers,
Ed
On Wed, 26 Aug 2009, Alexander Kerner wrote:
Hello everybody,
I am wondering where to get the source code for the class "GFF3Adapter" and
related.
I would like to take a look at the code because of a NullPointerException
when reading a gff3 file.
Exception in thread "Thread-1" java.lang.NullPointerException
at apollo.dataadapter.gff3.GFF3Adapter.processCds(GFF3Adapter.java:843)
at apollo.dataadapter.gff3.GFF3Adapter.parseGff(GFF3Adapter.java:526)
at
apollo.dataadapter.gff3.GFF3Adapter.getCurationSet(GFF3Adapter.java:140)
at
apollo.dataadapter.gff3.GFF3AdapterGUI.doOperation(GFF3AdapterGUI.java:198)
at
org.bdgp.swing.widget.DataAdapterChooser.doCommitWithExceptions(DataAdapterChooser.java:361)
at
apollo.main.DataLoader$ApolloAdapterChooser.doCommit(DataLoader.java:750)
at
org.bdgp.swing.widget.DataAdapterChooser$CommitRunnable.run(DataAdapterChooser.java:136)
at java.lang.Thread.run(Thread.java:595)
I already downloaded a tarball of GMOD, but I could not find this class.
Thanks in advance,
Alex
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