Re: [apollo] Web or desktop?

[Suzanna Lewis]

If/when the Apollo renewal comes through one of the primary aims is  
for the next-gen of Apollo to be web-based. Assuming funding, then an  
initial web-based version would first become available about a year  
from now.

-S
On Oct 9, 2009, at 8:37 AM, Ed Lee wrote:

Hi Daniel,

Apollo is a stand alone Java application, however it can be
deployed from the web through the use of Java Web Start.  WS
will take care of deploying Apollo to the user's computer
(great way to provide custom Apollo setups - used in the
Community Annotation System which tied Apollo and GBrowse
together through a Chado backend).

Cheers,
Ed

On Fri, 9 Oct 2009, Daniel Xavier de Sousa wrote:

Hi,
Please, I need check a question.
Is the apollo a web system or  desktop program?
Thanks,

-Daniel Xavier de Sousa
____________________________________________________________________________
De: cwilks <cwi...@stanford.edu>
Para: Ed Lee <e...@berkeleybop.org>; Scott Cain <sc...@scottcain.net>
Cc: apollo@fruitfly.org; "Dave Clements, GMOD Help Desk" <h...@gmod.org 
>
Enviadas: Sex, Outubro 2, 2009 9:19:24 PM
Assunto: Re: [apollo] Who is using the Apollo?
We (TAIR) also use Apollo heavily for our genome annotation  
efforts, despite
the fact that our version has been branched (by us) and is  
significantly
behind the main code base.
Chris
----- Original Message ----- From: "Ed Lee" <e...@berkeleybop.org>
To: "Scott Cain" <sc...@scottcain.net>
Cc: <apollo@fruitfly.org>; "Dave Clements, GMOD Help Desk" <h...@gmod.org 
>
Sent: Friday, October 02, 2009 12:11 PM
Subject: Re: [apollo] Who is using the Apollo?
> Hi Daniel,
>
> We did an informal survey of the user base about a year ago and to
> add Scott's list:
>
> * Howard Hughes Medical Institute SEA
> * UGA
> * Nasonia
> * VectorBase
> * Ensembl GeneBuild
> * Hamilton College
>
> There are some other groups that have shown interest in starting to
> use Apollo, although I'm not sure whether or not they have done so.
>
> Cheers,
> Ed
>
> On Fri, 2 Oct 2009, Scott Cain wrote:
>
>> Hi Daniel,
>>
>> At a GMOD meeting a few years ago, the participants came up with  
a list
of
>> groups that we knew of that were using Apollo with Chado (there  
are
probably
>> other users, but we weren't interested in the for that list).   
The ones
we
>> came up with are here:
>>
>> http://gmod.org/wiki/Apollo#Users
>>
>> Scott
>>
>> On Oct 2, 2009, at 3:19 PM, Dave Clements, GMOD Help Desk wrote:
>>
>>> Hi Daniel,
>>>
>>> As far as I know, there is not a list of Apollo users anywhere.
>>> People don't have to register to download and use it.  Creating  
a list
>>> of GMOD users and what components they use is on my todo list,  
but I
>>> don't know when I'll get to it.
>>>
>>> In the meantime, the best way to find out who is using it, may  
be to
>>> look at the archives for this list.  Go to
>>> http://mail.fruitfly.org/mailman/private/apollo/.  You'll need  
your
>>> email address and list password (which was mailed to you when you
>>> joined the list.).
>>>
>>> Dave C.
>>>
>>> On Fri, Oct 2, 2009 at 6:50 AM, Daniel Xavier de Sousa
>>> <daniel...@yahoo.com.br> wrote:
>>>> Hello,
>>>>
>>>> I`m quite new here, and a would like to know who is using the  
Apollo
now?
>>>>
>>>> I`m looking for a web system to run a medium genome project. I  
hope to
>>>> process the pipeline: calling sequences, cleaning the vector,
clustering
>>>> and
>>>> annotation.
>>>>
>>>> Thanks for all,
>>>>
>>>>
>>>> -Daniel Xavier de Sousa
>>>>
>>>> ________________________________
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>>>> apollo mailing list
>>>> apollo@fruitfly.org
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>>>>
>>>>
>>>
>>>
>>>
>>> -- * Please keep responses on the list!
>>> * Was this helpful?  Let us know at
http://gmod.org/wiki/Help_Desk_Feedback
>>> * http://gmod.org/wiki/GMOD_News
>>> _______________________________________________
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>>> apollo@fruitfly.org
>>> http://mail.fruitfly.org/mailman/listinfo/apollo
>>
>>  
-----------------------------------------------------------------------
>> Scott Cain, Ph. D. scott at scottcain dot net
>> GMOD Coordinator (http://gmod.org/) 216-392-3087
>> Ontario Institute for Cancer Research
>>
>>
>>
>>
>> _______________________________________________
>> apollo mailing list
>> apollo@fruitfly.org
>> http://mail.fruitfly.org/mailman/listinfo/apollo
>>
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