Hello,
I am having a problem with loading gff3-like(?) file into Apollo
1.11.3. Changing "CDS" to "match" solves the problem, but making the output of
this gene prediction program compatible with Apollo would be much more
sensible.
Below is uuencoded small gff3 file.
If anybody can point to incompatible things / provide me with
version acceptable by Apollo that will be very helpful.
Sincerely yours,
Darek Kedra
PS the error is:
Exception in thread "Thread-55"
apollo.dataadapter.NonFatalDataAdapterException: Invalid number of columns
at apollo.dataadapter.gff3.GFF3Entry.parseData(GFF3Entry.java:523)
at apollo.dataadapter.gff3.GFF3Entry.<init>(GFF3Entry.java:72)
begin 644 genecaller_ecol.gff3
M(R-G9F8M=F5R<VEO;B`@,PHC(U-E<75E;F-E.B`Q("@T-C,Y-C<U(&)P*3H@
M3D-?,#`P.3$S(",@17-C:&5R:6-H:6...@8v]l:2!S='(N($LM,3(@<W5B<W1R
M+B!-1S$V-34L"F-O;7!L971E(&=E;F]M92X*3D-?,#`P.3$S("`@("`@(&=E
M;F5C86QL97)?=C(N,#`@($-$4R`@("`@,S,W("`@("`R-SDY("`@(#,S."XW
M("`...@*r`@("`@("`P"4E$/3%?,3MP87)T:6%L/3`P.W1Y<&4]051'.W-C;W)E
M/3,R,BXQ-SMR8G-?;6]T:68]1T=!1R]'04='.W)B<U]S<&%C97(]-2TQ,&)P
M.V-S8V]R93TS,C(N,3<[<W-C;W)E/3$V+C4T.W)S8V]R93TQ,2XR-#MU<V-O
M<F4],2XS-3MT<V-O<F4],RXY-0I.0U\P,#`Y,3,@("`@("`...@9v5n96-a;&QE
M<E]V,BXP,"`...@0t13("`@("`R.#`Q("`@(#,W,S,@("`@,3$W+CD@("`K("`@
M("`@(#`)240],5\R.W!A<G1I86P],#`[='EP93U!5$<[<V-O<F4]-#,W+C0T
M.W)B<U]M;W1I9CU!1T=!1SMR8G-?<W!A8V5R/34M,3!B<#MC<V-O<F4].3<N
M-#8[<W-C;W)E/3(P+C0R.W)S8V]R93TQ-"XX-SMU<V-O<F4],"XS-#MT<V-O
M<F4],RXY-0I.0U\P,#`Y,3,@("`@("`...@9v5n96-a;&QE<E]V,BXP,"`...@0t13
M("`@("`S-S,T("`@(#4P,C`@("`@,3DU+C$@("`K("`@("`@(#`)240],5\S
M.W!A<G1I86P],#`[='EP93U!5$<[<V-O<F4]-C0X+C8Q.W)B<U]M;W1I9CU'
M1T$O1T%'+T%'1SMR8G-?<W!A8V5R/34M,3!B<#MC<V-O<F4],3DP+C<T.W-S
M8V]R93TT+C,V.W)S8V]R93TR+CDX.W5S8V]R93TM,RXX-#MT<V-O<F4],RXY
M-0I.0U\P,#`Y,3,@("`@("`...@9v5n96-a;&QE<E]V,BXP,"`...@0t13("`@("`U
M,C,T("`@(#4U,S`@("`...@."XP("`@("`K("`@("`@(#`)240],5\T.W!A<G1I
M86P],#`[='EP93U'5$<[<V-O<F4]-C4Q+C0Y.W)B<U]M;W1I9CU!1T=!1SMR
M8G-?<W!A8V5R/34M,3!B<#MC<V-O<F4],"XT-3MS<V-O<F4]-RXU-SMR<V-O
C<F4],30N.#<[=7-C;W)E/2TP+C`T.W1S8V]R93TM-BXV,`H`
`
end
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