Date: Wednesday, May 31, 2017 @ 13:06:55 Author: bpiotrowski Revision: 231562
extra2community: Moving hdf5-openmpi from extra to community Added: hdf5-openmpi/ hdf5-openmpi/repos/ hdf5-openmpi/trunk/ hdf5-openmpi/trunk/PKGBUILD hdf5-openmpi/trunk/mpi.patch -----------+ PKGBUILD | 67 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ mpi.patch | 18 ++++++++++++++++ 2 files changed, 85 insertions(+) Added: hdf5-openmpi/trunk/PKGBUILD =================================================================== --- hdf5-openmpi/trunk/PKGBUILD (rev 0) +++ hdf5-openmpi/trunk/PKGBUILD 2017-05-31 13:06:55 UTC (rev 231562) @@ -0,0 +1,67 @@ +# $Id$ +# Maintainer: Ronald van Haren <ronald.archlinux.org> +# Contributor: Stefan Husmann <[email protected]> +# Contributor: damir <[email protected]> +# Contributor: Tom K <[email protected]> +# Contributor: Jed Brown <[email protected]> +# Contributor: Simone Pezzuto <[email protected]> + +pkgname=hdf5-openmpi +_pkgname=hdf5 +pkgver=1.10.0_patch1 +_pkgver=1.10.0-patch1 +pkgrel=1 +arch=('i686' 'x86_64') +pkgdesc="General purpose library and file format for storing scientific data (OpenMPI version)" +url="http://www.hdfgroup.org/HDF5/"; +license=('custom') +depends=('zlib' 'sh' 'openmpi') +makedepends=('time') +provides=('hdf5') +conflicts=('hdf5') +source=(ftp://ftp.hdfgroup.org/HDF5/releases/${_pkgname}-1.10/${_pkgname}-${_pkgver}/src/${_pkgname}-${_pkgver}.tar.bz2 + mpi.patch) +sha1sums=('2f34251186fa9e59887d8f094bc0bc90187d0aa4' + '658d4a3e537c9c76da3200effa8f95b656a21936') + +build() { + cd "$srcdir/${_pkgname}-${pkgver/_/-}" + + # FS#33343 + patch -Np1 -i "${srcdir}/mpi.patch" + + ./configure \ + CXX="mpicxx" \ + CC="mpicc" \ + FC="mpif90" \ + F9X="mpif90" \ + RUNPARALLEL="mpirun" \ + OMPI_MCA_disable_memory_allocator=1 \ + --prefix=/usr \ + --with-pthread=/usr/lib/ \ + --enable-linux-lfs \ + --enable-unsupported \ + --enable-shared \ + --disable-static \ + --enable-build-mode=production \ + --with-zlib \ + --enable-parallel=yes \ + --enable-cxx \ + --disable-sharedlib-rpath + + make +} + +package() { + cd "$srcdir/${_pkgname}-${pkgver/_/-}" + + make -j1 DESTDIR="${pkgdir}" install + + install -d -m755 "$pkgdir/usr/share/$_pkgname" + mv "$pkgdir"/usr/share/{hdf5_examples,$_pkgname/examples} + + install -d -m755 "$pkgdir/usr/share/licenses/${pkgname}" + install -m644 "$srcdir/${_pkgname}-${pkgver/_/-}/COPYING" \ + "$pkgdir/usr/share/licenses/${pkgname}/LICENSE" +} + Property changes on: hdf5-openmpi/trunk/PKGBUILD ___________________________________________________________________ Added: svn:keywords ## -0,0 +1 ## +Id \ No newline at end of property Added: hdf5-openmpi/trunk/mpi.patch =================================================================== --- hdf5-openmpi/trunk/mpi.patch (rev 0) +++ hdf5-openmpi/trunk/mpi.patch 2017-05-31 13:06:55 UTC (rev 231562) @@ -0,0 +1,18 @@ +Prevent accidental inclusion of mpi c++ headers +when hdf5.h is included third party library + +https://bugs.gentoo.org/show_bug.cgi?id=420777 +https://bugs.archlinux.org/task/33343 + +--- a/src/H5public.h ++++ b/src/H5public.h +@@ -58,6 +58,8 @@ + # include <stddef.h> + #endif + #ifdef H5_HAVE_PARALLEL ++# define OMPI_SKIP_MPICXX /* Make sure that cxx specific headers are not included */ ++# define MPICH_SKIP_MPICXX + # include <mpi.h> + #ifndef MPI_FILE_NULL /*MPIO may be defined in mpi.h already */ + # include <mpio.h> +
