Date: Thursday, August 23, 2018 @ 20:42:22
Author: archange
Revision: 373479
upgpkg: hdf5-openmpi 1.10.3-1
Modified:
hdf5-openmpi/trunk/PKGBUILD
----------+
PKGBUILD | 84 +++++++++++++++++++++++++++----------------------------------
1 file changed, 38 insertions(+), 46 deletions(-)
Modified: PKGBUILD
===================================================================
--- PKGBUILD 2018-08-23 20:36:20 UTC (rev 373478)
+++ PKGBUILD 2018-08-23 20:42:22 UTC (rev 373479)
@@ -10,78 +10,70 @@
_pkgname=hdf5
_mpi=openmpi
pkgname=${_pkgname}-${_mpi}
-pkgver=1.10.2
-pkgrel=2
+pkgver=1.10.3
+pkgrel=1
pkgdesc="General purpose library and file format for storing scientific data
(${_mpi} version)"
arch=('x86_64')
-url="https://www.hdfgroup.org/HDF5/";
+url="https://www.hdfgroup.org/hdf5";
license=('custom')
depends=('zlib' 'libaec' 'bash' 'openmpi')
-makedepends=('time' 'gcc-fortran')
+makedepends=('cmake' 'time' 'gcc-fortran')
provides=('hdf5' 'hdf5-cpp-fortran' "hdf5-fortran-${_mpi}")
conflicts=('hdf5')
replaces=("hdf5-fortran-${_mpi}")
source=("https://support.hdfgroup.org/ftp/HDF5/releases/${_pkgname}-${pkgver:0:4}/${_pkgname}-${pkgver/_/-}/src/${_pkgname}-${pkgver/_/-}.tar.bz2";
'mpi.patch')
-md5sums=('41fb9347801b546fba323523a1c1af51'
+md5sums=('56c5039103c51a40e493b43c504ce982'
'dfa8dd50b8a7ebb3ad7249c627156cf9')
-sha256sums=('1cad5b7bfdf128dfc53cd16fba48f6e7ae4e93c75c371d9ec8dfc4df0c1fcb71'
+sha256sums=('c65cdcce4724a57fd3f8da9f0d109b497be30092acb9fac634d1291190d905a9'
'603006358175b7a8b35fa44c484cddf45c0381cf50db4fb7c50ea5969d361eca')
prepare() {
+ mkdir -p build
+
cd ${_pkgname}-${pkgver/_/-}
- # Fix building with GCC 8.1
- sed 's/\(.*\)(void) HDF_NO_UBSAN/HDF_NO_UBSAN \1(void)/' -i src/H5detect.c
-
# FS#33343
patch -p1 -i ../mpi.patch
}
build() {
- cd ${_pkgname}-${pkgver/_/-}
- ./configure \
- CXX="mpicxx" \
- CC="mpicc" \
- FC="mpif90" \
- F9X="mpif90" \
- RUNPARALLEL="mpirun" \
- OMPI_MCA_disable_memory_allocator=1 \
- --prefix=/usr \
- --docdir=/usr/share/doc/hdf5/ \
- --disable-static \
- --disable-sharedlib-rpath \
- --enable-build-mode=production \
- --enable-hl \
- --enable-cxx \
- --enable-fortran \
- --enable-parallel \
- --enable-unsupported \
- --with-pic \
- --with-zlib \
- --with-szlib
- make
+ cd build
+ CXX="mpicxx" \
+ CC="mpicc" \
+ FC="mpif90" \
+ F9X="mpif90" \
+ RUNPARALLEL="mpirun" \
+ OMPI_MCA_disable_memory_allocator=1 \
+ cmake ../${_pkgname}-${pkgver/_/-} \
+ -DCMAKE_INSTALL_PREFIX=/usr \
+ -DBUILD_SHARED_LIBS=ON \
+ -DCMAKE_BUILD_TYPE=Release \
+ -DALLOW_UNSUPPORTED=ON \
+ -DHDF5_BUILD_HL_LIB=ON \
+ -DHDF5_BUILD_CPP_LIB=ON \
+ -DHDF5_BUILD_FORTRAN=ON \
+ -DHDF5_ENABLE_PARALLEL=ON \
+ -DHDF5_ENABLE_Z_LIB_SUPPORT=ON \
+ -DHDF5_ENABLE_SZIP_SUPPORT=ON \
+ -DHDF5_ENABLE_SZIP_ENCODING=ON
+ cmake --build . --config Release
}
check() {
- cd ${_pkgname}-${pkgver/_/-}
- # Without this, checks are failing with messages like “error while loading
shared libraries: libhdf5.so.101: cannot open shared object file: No such file
or directory”
- export LD_LIBRARY_PATH="${srcdir}"/${pkgname}-${pkgver/_/-}/src/.libs/
- export
LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/c++/src/.libs/
- export
LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/fortran/src/.libs/
- export
LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/hl/src/.libs/
- export
LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/hl/c++/src/.libs/
- export
LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/hl/fortran/src/.libs/
- # This is a parallel build, they are always OpenMPI bugs
- make check || warning "Tests failed"
+ cd build
+ # Three expected test failures
(https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.3/src/hdf5-1.10.3-RELEASE.txt,
Known Problems):
+ # 142 - TEST_PAR_testphdf5 (Failed)
+ # 146 - TEST_PAR_t_cache_image (Timeout)
+ # 153 - TEST_PAR_t_shapesame (Failed)
+ ctest . -C Release || warning "Tests failed"
}
package() {
- cd ${_pkgname}-${pkgver/_/-}
+ cd build
make DESTDIR="${pkgdir}" install
- install -dm755 "${pkgdir}"/usr/share/doc/${_pkgname}
- mv "${pkgdir}"/usr/share/{hdf5_examples,doc/${_pkgname}/examples}
-
- install -Dm644 COPYING "${pkgdir}"/usr/share/licenses/${_pkgname}/LICENSE
+ install -d "${pkgdir}"/usr/share/licenses/${pkgname}
+ mv "${pkgdir}"/usr/share/COPYING "${pkgdir}"/usr/share/licenses/${pkgname}/
+ rm "${pkgdir}"/usr/share/{RELEASE,USING_HDF5_CMake}.txt
}
