Date: Monday, September 24, 2018 @ 18:29:38
Author: archange
Revision: 384675
Work around autotools vs CMake differences
Modified:
hdf5-openmpi/trunk/PKGBUILD
----------+
PKGBUILD | 63 ++++++++++++++++++++++++++++++++++++++++++++++---------------
1 file changed, 48 insertions(+), 15 deletions(-)
Modified: PKGBUILD
===================================================================
--- PKGBUILD 2018-09-24 17:03:28 UTC (rev 384674)
+++ PKGBUILD 2018-09-24 18:29:38 UTC (rev 384675)
@@ -10,7 +10,7 @@
_mpi=openmpi
pkgname=${_pkgname}-${_mpi}
pkgver=1.10.3
-pkgrel=1
+pkgrel=2
pkgdesc="General purpose library and file format for storing scientific data
(${_mpi} version)"
arch=('x86_64')
url="https://www.hdfgroup.org/hdf5";
@@ -29,8 +29,6 @@
'603006358175b7a8b35fa44c484cddf45c0381cf50db4fb7c50ea5969d361eca')
prepare() {
- mkdir -p build
-
cd ${_pkgname}-${pkgver/_/-}
# FS#33343
patch -p1 -i ../mpi.patch
@@ -37,7 +35,8 @@
}
build() {
- cd build
+ # Crazy workaround: run CMake to generate pkg-config file
+ mkdir -p build && cd build
CXX="mpicxx" \
CC="mpicc" \
FC="mpif90" \
@@ -56,24 +55,58 @@
-DHDF5_ENABLE_Z_LIB_SUPPORT=ON \
-DHDF5_ENABLE_SZIP_SUPPORT=ON \
-DHDF5_ENABLE_SZIP_ENCODING=ON
- cmake --build . --config Release
+ # But don’t build with it, it’s quite broken
+ cd ../${_pkgname}-${pkgver/_/-}
+ ./configure \
+ CXX="mpicxx" \
+ CC="mpicc" \
+ FC="mpif90" \
+ F9X="mpif90" \
+ RUNPARALLEL="mpirun" \
+ OMPI_MCA_disable_memory_allocator=1 \
+ --prefix=/usr \
+ --docdir=/usr/share/doc/hdf5/ \
+ --enable-static \
+ --disable-sharedlib-rpath \
+ --enable-build-mode=production \
+ --enable-hl \
+ --enable-cxx \
+ --enable-fortran \
+ --enable-parallel \
+ --enable-unsupported \
+ --with-pic \
+ --with-zlib \
+ --with-szlib
+ make
}
check() {
- cd build
- # Three expected test failures
(https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.3/src/hdf5-1.10.3-RELEASE.txt,
Known Problems):
- # 142 - TEST_PAR_testphdf5 (Failed)
- # 146 - TEST_PAR_t_cache_image (Timeout)
- # 153 - TEST_PAR_t_shapesame (Failed)
- ctest . -C Release || warning "Tests failed"
+ cd ${_pkgname}-${pkgver/_/-}
+ # Without this, checks are failing with messages like “error while loading
shared libraries: libhdf5.so.101: cannot open shared object file: No such file
or directory”
+ export LD_LIBRARY_PATH="${srcdir}"/${pkgname}-${pkgver/_/-}/src/.libs/
+ export
LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/c++/src/.libs/
+ export
LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/fortran/src/.libs/
+ export
LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/hl/src/.libs/
+ export
LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/hl/c++/src/.libs/
+ export
LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/hl/fortran/src/.libs/
+ # This is a parallel build, they are always OpenMPI bugs
+ make check || warning "Tests failed"
}
package() {
- cd build
+ cd ${_pkgname}-${pkgver/_/-}
make DESTDIR="${pkgdir}" install
- install -d "${pkgdir}"/usr/share/licenses/${pkgname}
- mv "${pkgdir}"/usr/share/COPYING "${pkgdir}"/usr/share/licenses/${pkgname}/
- rm "${pkgdir}"/usr/share/{RELEASE,USING_HDF5_CMake}.txt
+ # Remove leftover test files
+ rm "${pkgdir}"/usr/include/tst{ds,image,lite,table}{,_tests}.mod
+
+ # Move examples to a proper place
+ install -dm755 "${pkgdir}"/usr/share/doc/${_pkgname}
+ mv "${pkgdir}"/usr/share/{hdf5_examples,doc/${_pkgname}/examples}
+
+ install -Dm644 COPYING -t "${pkgdir}"/usr/share/licenses/${_pkgname}
+
+ # Install pkg-config files from CMake tree
+ install -Dm644 ../build/CMakeFiles/hdf5{,_hl}{,_cpp}-${pkgver}.pc -t
"${pkgdir}"/usr/lib/pkgconfig/
}
