aroma-affymetrix  

Messages by Date

• 2011/04/14 [aroma.affymetrix] Combining paired and unpaired analysis Kai
• 2011/04/13 [aroma.affymetrix] For detecting alternate splicing, which algorithm should I use? James
• 2011/04/13 [aroma.affymetrix] Re: gcRMA-HuEx-1_0-st-v2 problem James
• 2011/04/12 [aroma.affymetrix] AromaUnitTotalCnBinarySet vs CnChipEffectSet Kai
• 2011/04/11 RE: [aroma.affymetrix] aroma.affymetrix v2.1.0 released Hooiveld, Guido
• 2011/04/11 [aroma.affymetrix] aroma.affymetrix v2.1.0 released Henrik Bengtsson
• 2011/04/07 Re: [aroma.affymetrix] Re: gcRMA-HuEx-1_0-st-v2 problem Henrik Bengtsson
• 2011/04/06 [aroma.affymetrix] Re: gcRMA-HuEx-1_0-st-v2 problem James
• 2011/04/06 Re: [aroma.affymetrix] gcRMA-HuEx-1_0-st-v2 problem Henrik Bengtsson
• 2011/04/06 [aroma.affymetrix] gcRMA-HuEx-1_0-st-v2 problem James
• 2011/04/05 Re: [aroma.affymetrix] question about how to get the gene centric values for a probe set? Henrik Bengtsson
• 2011/04/05 [aroma.affymetrix] question about how to get the gene centric values for a probe set? xiaowei guan
• 2011/04/03 Re: [aroma.affymetrix] Importing plier expression from APT Henrik Bengtsson
• 2011/04/01 [aroma.affymetrix] Importing plier expression from APT Fong
• 2011/03/28 Re: [aroma.affymetrix] Re: problems with CbsModel analyzing Mapping250_Nsp and Sty data Henrik Bengtsson
• 2011/03/28 [aroma.affymetrix] Bioinformatics Opening @ Barts Cancer Institute Claude Chelala
• 2011/03/28 [aroma.affymetrix] Re: GWS_6 hg19 cstratowa
• 2011/03/28 [aroma.affymetrix] Re: problems with CbsModel analyzing Mapping250_Nsp and Sty data mortiz
• 2011/03/17 Re: Filtering out loci downstream of CRMAv2 (Was: Re: [aroma.affymetrix] Re: AromaUnitTotalCnBinarySet Manipulation) Henrik Bengtsson
• 2011/03/17 Re: [aroma.affymetrix] output of Affy Nsp and Sty calls in .ped / .map format Henrik Bengtsson
• 2011/03/17 [aroma.affymetrix] output of Affy Nsp and Sty calls in .ped / .map format Herbeck
• 2011/03/17 Re: [aroma.affymetrix] Re: RasterImage problem upon installation/update aroma.affymetrix Henrik Bengtsson
• 2011/03/17 [aroma.affymetrix] Re: RasterImage problem upon installation/update aroma.affymetrix AC
• 2011/03/16 Re: [aroma.affymetrix] RasterImage problem upon installation/update aroma.affymetrix Henrik Bengtsson
• 2011/03/16 [aroma.affymetrix] RasterImage problem upon installation/update aroma.affymetrix AC
• 2011/03/14 [aroma.affymetrix] Re: Aroma Affymetrix shell variable path? Fong
• 2011/03/14 Re: [aroma.affymetrix] Aroma Affymetrix shell variable path? Pierre Neuvial
• 2011/03/14 [aroma.affymetrix] Aroma Affymetrix shell variable path? Fong
• 2011/03/13 Re: [aroma.affymetrix] Modify Chromosome Explorer plotting functions Henrik Bengtsson
• 2011/03/13 Re: [aroma.affymetrix] Re: problems with CbsModel analyzing Mapping250_Nsp and Sty data Henrik Bengtsson
• 2011/03/11 Re: [aroma.affymetrix] Append function Henrik Bengtsson
• 2011/03/11 Re: [aroma.affymetrix] Append function Ajanthah Sangaralingam
• 2011/03/11 [aroma.affymetrix] Re: problems with CbsModel analyzing Mapping250_Nsp and Sty data mortiz
• 2011/03/10 Re: [aroma.affymetrix] Append function Henrik Bengtsson
• 2011/03/10 Re: [aroma.affymetrix] Append function Henrik Bengtsson
• 2011/03/10 [aroma.affymetrix] Append function Ajanthah Sangaralingam
• 2011/03/08 Re: [aroma.affymetrix] Problem with naïve genotyping (TumorBoost vignette) Henrik Bengtsson
• 2011/03/08 Re: [aroma.affymetrix] Problem with naïve genotyping (TumorBoost vignette) Oscar Rueda
• 2011/03/07 Re: [aroma.affymetrix] Human Exon CDF Henrik Bengtsson
• 2011/03/07 [aroma.affymetrix] Human Exon CDF Fong
• 2011/03/07 Re: [aroma.affymetrix] Problem with naïve genotyping (TumorBoost vignette) Henrik Bengtsson
• 2011/03/07 Re: [aroma.affymetrix] Problem with naïve genotyping (TumorBoost vignette) Oscar Rueda
• 2011/03/04 Re: [aroma.affymetrix] Error with extractRawCopyNumbers Henrik Bengtsson
• 2011/03/04 [aroma.affymetrix] Re: Error with AllelicCrosstalkCalibration and process Emilie_Sohier
• 2011/03/04 [aroma.affymetrix] Re: Error with AllelicCrosstalkCalibration and process Emilie_Sohier
• 2011/03/04 Re: [aroma.affymetrix] Error with AllelicCrosstalkCalibration and process Emilie Sohier
• 2011/03/03 Re: [aroma.affymetrix] Problem with naïve genotyping (TumorBoost vignette) Henrik Bengtsson
• 2011/03/03 Re: [aroma.affymetrix] Error with AllelicCrosstalkCalibration and process Henrik Bengtsson
• 2011/03/03 [aroma.affymetrix] Error with AllelicCrosstalkCalibration and process Emilie_Sohier
• 2011/03/03 [aroma.affymetrix] Error with extractRawCopyNumbers Emilie_Sohier
• 2011/02/28 Re: [aroma.affymetrix] Problem with naïve genotyping (TumorBoost vignette) Henrik Bengtsson
• 2011/02/28 Re: [aroma.affymetrix] Problem with naïve genotyping (TumorBoost vignette) Oscar Rueda
• 2011/02/27 Re: [aroma.affymetrix] Problem with naïve genotyping (TumorBoost vignette) Henrik Bengtsson
• 2011/02/26 Re: Averaging replicated tumor-normal CN ratios? (Was: Re: [aroma.affymetrix] AromaUnitTotalCnBinarySet Manipulation) Henrik Bengtsson
• 2011/02/26 Re: [aroma.affymetrix] Re: Error in loadNamespace(name) : there is no package called 'png' Henrik Bengtsson
• 2011/02/26 Re: [aroma.affymetrix] Re: need to find an archived version of "aroma" which will work with the "kth" package Henrik Bengtsson
• 2011/02/25 [aroma.affymetrix] Modify Chromosome Explorer plotting functions Kai
• 2011/02/25 [aroma.affymetrix] Re: need to find an archived version of "aroma" which will work with the "kth" package Scott Ochsner
• 2011/02/25 Re: [aroma.affymetrix] need to find an archived version of "aroma" which will work with the "kth" package James F. Reid
• 2011/02/25 [aroma.affymetrix] need to find an archived version of "aroma" which will work with the "kth" package Scott Ochsner
• 2011/02/24 [aroma.affymetrix] Re: Error in loadNamespace(name) : there is no package called 'png' Richard Beyer
• 2011/02/24 [aroma.affymetrix] Re: Pooled Reference vs Paired Analysis Gregory W
• 2011/02/24 [aroma.affymetrix] Re: AromaUnitTotalCnBinarySet Manipulation greg . d . wall
• 2011/02/24 [aroma.affymetrix] Error in loadNamespace(name) : there is no package called 'png' Richard Beyer
• 2011/02/23 [aroma.affymetrix] AromaUnitTotalCnBinarySet Manipulation Gregory W
• 2011/02/23 [aroma.affymetrix] Problem with naïve genotyping (TumorBoost vignette) Oscar Rueda
• 2011/02/18 [aroma.affymetrix] aroma.affymetrix v2.0.0 released Henrik Bengtsson
• 2011/02/12 Re: [aroma.affymetrix] Pooled Reference vs Paired Analysis Henrik Bengtsson
• 2011/02/12 Re: [aroma.affymetrix] probe sequence files Henrik Bengtsson
• 2011/02/10 [aroma.affymetrix] probe sequence files Jungmin
• 2011/02/10 Re: [aroma.affymetrix] Extract raw data for core transcripts from EXON arrays Mark Robinson
• 2011/02/09 Re: [aroma.affymetrix] problems with CbsModel analyzing Mapping250_Nsp and Sty data Henrik Bengtsson
• 2011/02/09 [aroma.affymetrix] problems with CbsModel analyzing Mapping250_Nsp and Sty data mortiz
• 2011/02/08 [aroma.affymetrix] Extract raw data for core transcripts from EXON arrays Anbarasu L A
• 2011/02/07 Re: [aroma.affymetrix] Error message: Exception: Something is wrong with the data. Too many non-finite values Henrik Bengtsson
• 2011/02/04 [aroma.affymetrix] Error message: Exception: Something is wrong with the data. Too many non-finite values Mete Civelek
• 2011/02/04 [aroma.affymetrix] Re: Problem setting up dataset with AffymetrixCelSet$byName Sake van Pelt
• 2011/02/04 Re: [aroma.affymetrix] Problem setting up dataset with AffymetrixCelSet$byName Henrik Bengtsson
• 2011/02/04 Re: [aroma.affymetrix] Problem setting up dataset with AffymetrixCelSet$byName Henrik Bengtsson
• 2011/02/04 [aroma.affymetrix] Problem setting up dataset with AffymetrixCelSet$byName Sake van Pelt
• 2011/02/02 Re: Understanding probe types, e.g. PM (Was: Re: [aroma.affymetrix] understanding probe tags) Taku Tokuyasu
• 2011/02/02 [aroma.affymetrix] GWS_6 hg19 Mete Civelek
• 2011/01/28 RE: [aroma.affymetrix] Re: writeCdf.AffyGenePDInfo Error in order(u$atom): argument 1 is not a vector Hooiveld, Guido
• 2011/01/28 Re: Understanding probe types, e.g. PM (Was: Re: [aroma.affymetrix] understanding probe tags) Henrik Bengtsson
• 2011/01/28 [aroma.affymetrix] understanding probe tags Taku Tokuyasu
• 2011/01/28 Re: [aroma.affymetrix] exploratory analysis Henrik Bengtsson
• 2011/01/28 [aroma.affymetrix] Re: Recommendations on re-running on a subset of samples Taku Tokuyasu
• 2011/01/28 [aroma.affymetrix] exploratory analysis Diya Vaka
• 2011/01/28 Re: [aroma.affymetrix] Re: writeCdf.AffyGenePDInfo Error in order(u$atom): argument 1 is not a vector Henrik Bengtsson
• 2011/01/28 [aroma.affymetrix] Re: writeCdf.AffyGenePDInfo Error in order(u$atom): argument 1 is not a vector Sake van Pelt
• 2011/01/28 Re: [aroma.affymetrix] writeCdf.AffyGenePDInfo Error in order(u$atom): argument 1 is not a vector Henrik Bengtsson
• 2011/01/28 [aroma.affymetrix] Re: writeCdf.AffyGenePDInfo Error in order(u$atom): argument 1 is not a vector Sake van Pelt
• 2011/01/28 [aroma.affymetrix] writeCdf.AffyGenePDInfo Error in order(u$atom): argument 1 is not a vector Sake van Pelt
• 2011/01/27 [aroma.affymetrix] Pooled Reference vs Paired Analysis Gregory W
• 2011/01/27 [aroma.affymetrix] Gene 1.0 ST analysis with Aroma MaximB
• 2011/01/24 Re: [aroma.affymetrix] Recommendations on re-running on a subset of samples Henrik Bengtsson
• 2011/01/24 Re: [aroma.affymetrix] To many segments and QC in SNP6 analysis Henrik Bengtsson
• 2011/01/24 [aroma.affymetrix] Recommendations on re-running on a subset of samples Taku Tokuyasu
• 2011/01/24 [aroma.affymetrix] Re: exon array analysis kripa
• 2011/01/24 [aroma.affymetrix] Re: exon array analysis kripa
• 2011/01/23 Re: [aroma.affymetrix] exon array analysis Mark Robinson
• 2011/01/23 [aroma.affymetrix] exon array analysis kripa raman
• 2011/01/21 [aroma.affymetrix] To many segments and QC in SNP6 analysis cruckert
• 2011/01/20 [aroma.affymetrix] Re: CN analysis with Nsp+Sty chips with pooled reference? (Was: Re: Aroma.affymetrix package: annotate copy number estimate with SNPs and Gene names) Henrik Bengtsson
• 2011/01/20 Re: [aroma.affymetrix] Load Already Preprocessed Arrays Henrik Bengtsson
• 2011/01/20 Re: [aroma.affymetrix] Re: CRMA v2 failed at FragmentLengthNormalization for Mouse diversity array Henrik Bengtsson
• 2011/01/19 [aroma.affymetrix] Load Already Preprocessed Arrays Gregory W
• 2011/01/19 [aroma.affymetrix] Re: CRMA v2 failed at FragmentLengthNormalization for Mouse diversity array yupu
• 2011/01/14 [aroma.affymetrix] Re: Running FIRMA on HG-U133 Plus 2.0 Arrays Fong
• 2011/01/14 [aroma.affymetrix] Re: Aroma.affymetrix package: annotate copy number estimate with SNPs and Gene names Henrik Bengtsson
• 2011/01/14 Re: [aroma.affymetrix] CRMA v2 failed at FragmentLengthNormalization for Mouse diversity array Henrik Bengtsson
• 2011/01/14 [aroma.affymetrix] Re: Aroma.affymetrix package: annotate copy number estimate with SNPs and Gene names Henrik Bengtsson
• 2011/01/14 Re: [aroma.affymetrix] Re: Questions on GLAD model Henrik Bengtsson
• 2011/01/14 Re: [aroma.affymetrix] Firma score help Mark Robinson
• 2011/01/14 Re: [aroma.affymetrix] Running FIRMA on HG-U133 Plus 2.0 Arrays Mark Robinson
• 2011/01/13 [aroma.affymetrix] CRMA v2 failed at FragmentLengthNormalization for Mouse diversity array yupu
• 2011/01/11 [aroma.affymetrix] Re: identify highly expressed genes kraman
• 2011/01/11 [aroma.affymetrix] aroma.affymetrix v1.9.0 released Henrik Bengtsson
• 2011/01/10 [aroma.affymetrix] identify highly expressed genes kraman
• 2011/01/10 [aroma.affymetrix] Re: Questions on GLAD model Kai
• 2011/01/08 Re: [aroma.affymetrix] Generating regions.xls from CBS and GLAD Henrik Bengtsson
• 2011/01/08 Re: [aroma.affymetrix] Re: Probe Location Henrik Bengtsson
• 2011/01/07 [aroma.affymetrix] Generating regions.xls from CBS and GLAD Kai
• 2011/01/06 Re: [aroma.affymetrix] Questions on GLAD model Henrik Bengtsson
• 2011/01/05 [aroma.affymetrix] Running FIRMA on HG-U133 Plus 2.0 Arrays Fong
• 2011/01/04 [aroma.affymetrix] Firma score help sabrina
• 2011/01/04 [aroma.affymetrix] Unsubscribe Anita Sveen
• 2011/01/03 [aroma.affymetrix] Questions on GLAD model Kai
• 2010/12/29 [aroma.affymetrix] Re: Probe Location Gregory W
• 2010/12/29 [aroma.affymetrix] Probe Location Gregory W
• 2010/12/27 [aroma.affymetrix] Re: parallel computing with aroma copy number segmentation Kai
• 2010/12/27 Re: [aroma.affymetrix] NA values in fracB Henrik Bengtsson
• 2010/12/27 Re: [aroma.affymetrix] Re: Incorrect Number of Probes to Probesets? Henrik Bengtsson
• 2010/12/23 [aroma.affymetrix] NA values in fracB allab
• 2010/12/22 [aroma.affymetrix] Re: Incorrect Number of Probes to Probesets? Fong
• 2010/12/22 Re: [aroma.affymetrix] Parallel Processing Greg Wall
• 2010/12/21 [aroma.affymetrix] Incorrect Number of Probes to Probesets? Fong
• 2010/12/21 Re: [aroma.affymetrix] processing time increase when sample annotation files (*.saf) are present under 'annotationData/samples' Henrik Bengtsson
• 2010/12/21 Re: [aroma.affymetrix] fracB and BAF values Henrik Bengtsson
• 2010/12/21 Re: [aroma.affymetrix] Parallel Processing Henrik Bengtsson
• 2010/12/21 Re: [aroma.affymetrix] problems installing ebimage on unix Henrik Bengtsson
• 2010/12/21 Re: [aroma.affymetrix] Re: GenomeWideSNP_6 hg19 Henrik Bengtsson
• 2010/12/20 Re: [aroma.affymetrix] fracB and BAF values Pierre Neuvial
• 2010/12/20 [aroma.affymetrix] processing time increase when sample annotation files (*.saf) are present under 'annotationData/samples' James F. Reid
• 2010/12/20 [aroma.affymetrix] fracB and BAF values allab
• 2010/12/17 [aroma.affymetrix] Parallel Processing Gregory W
• 2010/12/15 [aroma.affymetrix] problems installing ebimage on unix kraman
• 2010/12/11 [aroma.affymetrix] Re: GenomeWideSNP_6 hg19 Hans-Ulrich
• 2010/12/10 [aroma.affymetrix] Re: dynamic reports kraman
• 2010/12/10 Re: [aroma.affymetrix] GenomeWideSNP_6 hg19 Henrik Bengtsson
• 2010/12/10 [aroma.affymetrix] GenomeWideSNP_6 hg19 Hans-Ulrich
• 2010/12/09 [aroma.affymetrix] Re: MOUSEDIVm520650 and CRMAv2 Hans-Ulrich
• 2010/12/07 Re: [aroma.affymetrix] Re: Aroma.affymetrix vs. Affymetrix Powertools Henrik Bengtsson
• 2010/12/07 Re: [aroma.affymetrix] Re: MOUSEDIVm520650 and CRMAv2 Henrik Bengtsson
• 2010/12/06 [aroma.affymetrix] Re: Aroma.affymetrix vs. Affymetrix Powertools Sebastian Schönherr
• 2010/12/06 [aroma.affymetrix] Re: Aroma.affymetrix vs. Affymetrix Powertools Sebastian Schönherr
• 2010/12/06 [aroma.affymetrix] Re: Aroma.affymetrix vs. Affymetrix Powertools Sebastian Schönherr
• 2010/12/06 [aroma.affymetrix] Re: MOUSEDIVm520650 and CRMAv2 Hans-Ulrich
• 2010/12/06 Re: [aroma.affymetrix] DNA segmentation error: DNAcopy error Henrik Bengtsson
• 2010/12/06 [aroma.affymetrix] DNA segmentation error: DNAcopy error Yan Jiao
• 2010/12/05 Re: [aroma.affymetrix] DNA segmentation error: sfit error Henrik Bengtsson
• 2010/12/05 [aroma.affymetrix] DNA segmentation error: sfit error Yan Jiao
• 2010/12/04 Re: [aroma.affymetrix] bug in function pdInfo2Cdf Henrik Bengtsson
• 2010/12/03 Re: [aroma.affymetrix] Aroma.affymetrix vs. Affymetrix Powertools Henrik Bengtsson
• 2010/12/03 Re: [aroma.affymetrix] Help Regarding GCRMA Human Exon. Henrik Bengtsson
• 2010/12/03 [aroma.affymetrix] bug in function pdInfo2Cdf Hooiveld, Guido
• 2010/12/03 Re: [aroma.affymetrix] Help Regarding GCRMA Human Exon. Prithish Banerjee
• 2010/12/03 Re: Processing 50+50K chip set? (Was: Re: [aroma.affymetrix]) Henrik Bengtsson
• 2010/12/03 [aroma.affymetrix] Yan Jiao
• 2010/12/03 [aroma.affymetrix] Aroma.affymetrix vs. Affymetrix Powertools Sebastian Schönherr
• 2010/12/02 Re: [aroma.affymetrix] Help Regarding GCRMA Human Exon. Henrik Bengtsson
• 2010/12/02 Re: [aroma.affymetrix] Re: MOUSEDIVm520650 and CRMAv2 Henrik Bengtsson
• 2010/12/02 Re: [aroma.affymetrix] parallel computing with aroma copy number segmentation Henrik Bengtsson
• 2010/12/02 Re: [aroma.affymetrix] dynamic reports Henrik Bengtsson
• 2010/12/02 Re: [aroma.affymetrix] DNA segmentation result Henrik Bengtsson
• 2010/12/02 [aroma.affymetrix] Help Regarding GCRMA Human Exon. Prithish Banerjee
• 2010/12/02 [aroma.affymetrix] parallel computing with aroma copy number segmentation Kai
• 2010/12/01 [aroma.affymetrix] dynamic reports kraman
• 2010/12/01 [aroma.affymetrix] Re: MOUSEDIVm520650 and CRMAv2 Hans-Ulrich
• 2010/12/01 Re: [aroma.affymetrix] Re: MOUSEDIVm520650 and CRMAv2 Henrik Bengtsson
• 2010/12/01 [aroma.affymetrix] Re: MOUSEDIVm520650 and CRMAv2 Hans-Ulrich
• 2010/11/30 RE: [aroma.affymetrix] DNA segmentation result Yan Jiao
• 2010/11/30 RE: [aroma.affymetrix] DNA segmentation result Yan Jiao
• 2010/11/30 RE: [aroma.affymetrix] DNA segmentation result Yan Jiao
• 2010/11/29 Re: [aroma.affymetrix] DNA segmentation result Pierre Neuvial
• 2010/11/29 [aroma.affymetrix] DNA segmentation result Yan Jiao
• 2010/11/29 [aroma.affymetrix] mails from aroma-affymetrix mailing list As Phodel
• 2010/11/28 Re: [aroma.affymetrix] DNAcopy parameter Henrik Bengtsson
• 2010/11/28 Re: [aroma.affymetrix] Parameters Sent To DNAcopy Functions Henrik Bengtsson
• 2010/11/28 Re: [aroma.affymetrix] Copy number segmentation result Pierre Neuvial
• 2010/11/28 Re: [aroma.affymetrix] DNAcopy parameter Pierre Neuvial
• 2010/11/28 Re: [aroma.affymetrix] subselect samples for segmentation Pierre Neuvial
• 2010/11/25 [aroma.affymetrix] subselect samples for segmentation Yan Jiao
• 2010/11/24 Re: [aroma.affymetrix] Mouse430_2 CDF Location Mark Cowley
• 2010/11/24 [aroma.affymetrix] Mouse430_2 CDF Location Dario Strbenac
• 2010/11/24 [aroma.affymetrix] DNAcopy parameter Yan Jiao
• 2010/11/24 Re: [aroma.affymetrix] libgsl-0.dll missing error Henrik Bengtsson
• 2010/11/24 Re: [aroma.affymetrix] libgsl-0.dll missing error Henrik Bengtsson
• 2010/11/24 RE: [aroma.affymetrix] libgsl-0.dll missing error Yan Jiao
• 2010/11/24 [aroma.affymetrix] Copy number segmentation result Yan Jiao

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