Messages by Date
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2010/11/24
Re: [aroma.affymetrix] libgsl-0.dll missing error
Henrik Bengtsson
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2010/11/24
RE: [aroma.affymetrix] libgsl-0.dll missing error
Yan Jiao
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2010/11/23
Re: [aroma.affymetrix] libgsl-0.dll missing error
Henrik Bengtsson
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2010/11/23
RE: [aroma.affymetrix] libgsl-0.dll missing error
Yan Jiao
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2010/11/23
Re: [aroma.affymetrix] libgsl-0.dll missing error
Henrik Bengtsson
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2010/11/23
[aroma.affymetrix] libgsl-0.dll missing error
Yan Jiao
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2010/11/22
Re: [aroma.affymetrix] doCRMAv1 running time
Henrik Bengtsson
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2010/11/22
[aroma.affymetrix] doCRMAv1 running time
Yan Jiao
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2010/11/19
Re: [aroma.affymetrix] Re: Could not locate a file for this chip type: Mapping50K_Hind240 (Was: FW:)
Henrik Bengtsson
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2010/11/19
Re: [aroma.affymetrix] Re: Could not locate a file for this chip type: Mapping50K_Hind240 (Was: FW:)
Henrik Bengtsson
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2010/11/18
Re: [aroma.affymetrix] error with fit() Mouse Exon
Richard Beyer
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2010/11/18
[aroma.affymetrix] FW:
Yan Jiao
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2010/11/17
Re: [aroma.affymetrix] error with fit() Mouse Exon
Henrik Bengtsson
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2010/11/17
[aroma.affymetrix] error with fit() Mouse Exon
Richard Beyer
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2010/11/15
Re: [aroma.affymetrix] Re: EBImage issue
Henrik Bengtsson
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2010/11/15
[aroma.affymetrix] Re: EBImage issue
Elsa Chacko
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2010/11/15
Re: [aroma.affymetrix] Re: EBImage issue
Henrik Bengtsson
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2010/11/15
[aroma.affymetrix] Re: EBImage issue
Elsa Chacko
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2010/11/15
Re: [aroma.affymetrix] EBImage issue
Henrik Bengtsson
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2010/11/15
[aroma.affymetrix] EBImage issue
Elsa Chacko
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2010/11/12
[aroma.affymetrix] FYI: The aroma project website will be down part of the day tomorrow Saturday Nov 14
Henrik Bengtsson
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2010/11/10
[aroma.affymetrix] Installing aroma.affymetrix v1.8.0: Retry now if it didn't update before
Henrik Bengtsson
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2010/11/10
Re: [aroma.affymetrix] ACNE for matched pairs
Henrik Bengtsson
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2010/11/10
Re: [aroma.affymetrix] ACNE for matched pairs
Oscar Rueda
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2010/11/10
Re: [aroma.affymetrix] problems with sfit on Windows for CRMAv2 analysis
Johan Staaf
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2010/11/10
[aroma.affymetrix] problems with sfit on Windows for CRMAv2 analysis
Johan Staaf
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2010/11/10
Re: [aroma.affymetrix] Re: No write permissions error
Henrik Bengtsson
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2010/11/10
[aroma.affymetrix] Re: No write permissions error
Elsa Chacko
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2010/11/10
Re: [aroma.affymetrix] problems with sfit on Windows for CRMAv2 analysis
Henrik Bengtsson
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2010/11/09
Re: [aroma.affymetrix] No write permissions error
Henrik Bengtsson
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2010/11/09
[aroma.affymetrix] No write permissions error
Elsa Chacko
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2010/11/09
Re: [aroma.affymetrix] Re: MOUSEDIVm520650 and CRMAv2
Henrik Bengtsson
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2010/11/09
Re: [aroma.affymetrix] Re: MOUSEDIVm520650 and CRMAv2
Henrik Bengtsson
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2010/11/09
[aroma.affymetrix] Re: MOUSEDIVm520650 and CRMAv2
Hans-Ulrich
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2010/11/08
[aroma.affymetrix] aroma.affymetrix v1.8.0 released
Henrik Bengtsson
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2010/11/05
Re: [aroma.affymetrix] MOUSEDIVm520650 and CRMAv2
Henrik Bengtsson
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2010/11/05
[aroma.affymetrix] MOUSEDIVm520650 and CRMAv2
Hans-Ulrich
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2010/11/04
Re: [aroma.affymetrix] ACNE for matched pairs
Henrik Bengtsson
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2010/11/04
Re: [aroma.affymetrix] ACNE for matched pairs
Oscar Rueda
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2010/11/03
[aroma.affymetrix] How to cite CRMA v2
Henrik Bengtsson
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2010/11/03
Re: [aroma.affymetrix] ACNE for matched pairs
Henrik Bengtsson
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2010/11/03
[aroma.affymetrix] ACNE for matched pairs
Oscar Rueda
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2010/11/03
[aroma.affymetrix] ACNE for matched pairs
Oscar Rueda
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2010/10/27
Re: [aroma.affymetrix] Re: CbsModel parameters
Venkatraman Seshan
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2010/10/27
Re: [aroma.affymetrix] Re: CbsModel parameters
Henrik Bengtsson
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2010/10/27
[aroma.affymetrix] Re: CbsModel parameters
Kai
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2010/10/27
Re: [aroma.affymetrix] Installing FIRMAGene
Mark Robinson
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2010/10/26
Re: [aroma.affymetrix] Re: CbsModel parameters
Henrik Bengtsson
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2010/10/26
Re: [aroma.affymetrix] Re: CbsModel parameters
Henrik Bengtsson
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2010/10/26
[aroma.affymetrix] Installing FIRMAGene
Jon Tang
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2010/10/26
[aroma.affymetrix] Re: CbsModel parameters
Kai
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2010/10/24
Re: [aroma.affymetrix] Help needed regarding GCRMA normalization of exon arrays using aroma.affymetrix.....
Henrik Bengtsson
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2010/10/24
Re: [aroma.affymetrix] Re: Trying to create a CDF file from an R package/environment problems
Henrik Bengtsson
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2010/10/24
Re: [aroma.affymetrix] Exception: None of the data directories exist
Henrik Bengtsson
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2010/10/24
Re: [aroma.affymetrix] Can aroma.affymertix handle the data of agilent chip?
Henrik Bengtsson
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2010/10/20
Re: [aroma.affymetrix] Missing file "bpmapCluster2Cdf.R" in "Create a CDF from a BpMap"
Mark Robinson
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2010/10/20
RE: [aroma.affymetrix] Missing file "bpmapCluster2Cdf.R" in "Create a CDF from a BpMap"
Steven McKinney
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2010/10/20
[aroma.affymetrix] Missing file "bpmapCluster2Cdf.R" in "Create a CDF from a BpMap"
vegard
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2010/10/14
[aroma.affymetrix] Re: Trying to create a CDF file from an R package/environment problems
Fong
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2010/10/14
[aroma.affymetrix] Exception: None of the data directories exist
allab
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2010/10/13
[aroma.affymetrix] Can aroma.affymertix handle the data of agilent chip?
Yue Hu
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2010/10/12
[aroma.affymetrix] Trying to create a CDF file from an R package/environment problems
Fong
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2010/09/29
Re: [aroma.affymetrix] Parameters Sent To DNAcopy Functions
Dario Strbenac
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2010/09/29
Re: [aroma.affymetrix] Parameters Sent To DNAcopy Functions
Henrik Bengtsson
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2010/09/29
[aroma.affymetrix] Parameters Sent To DNAcopy Functions
Dario Strbenac
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2010/09/29
Re: [aroma.affymetrix] Help needed regarding GCRMA normalization of exon arrays using aroma.affymetrix.....
Henrik Bengtsson
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2010/09/28
Re: [aroma.affymetrix] Problems extracting intensity values after normalization
Henrik Bengtsson
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2010/09/28
Re: [aroma.affymetrix] unusual copy number analysis result - split copy numbers
Henrik Bengtsson
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2010/09/28
Re: [aroma.affymetrix] unusual copy number analysis result - split copy numbers
Henrik Bengtsson
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2010/09/28
Re: [aroma.affymetrix] Problem with read CDF files
Pierre Neuvial
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2010/09/27
Re: [aroma.affymetrix] Help needed regarding GCRMA normalization of exon arrays using aroma.affymetrix.....
Henrik Bengtsson
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2010/09/27
Re: [aroma.affymetrix] CbsModel parameters
Henrik Bengtsson
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2010/09/27
Re: [aroma.affymetrix] Problem with read CDF files
Dario Strbenac
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2010/09/27
[aroma.affymetrix] Problem with read CDF files
Wero
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2010/09/27
[aroma.affymetrix] CbsModel parameters
Kai
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2010/09/27
Re: [aroma.affymetrix] Help needed regarding GCRMA normalization of exon arrays using aroma.affymetrix.....
Prithish Banerjee
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2010/09/27
Re: [aroma.affymetrix] Re: Alternatives way to access the mailing list archive
Laurent Gatto
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2010/09/26
Re: [aroma.affymetrix] Re: CbsModel
Henrik Bengtsson
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2010/09/26
[aroma.affymetrix] Re: Alternatives way to access the mailing list archive
Henrik Bengtsson
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2010/09/26
Re: [aroma.affymetrix] unusual copy number analysis result - split copy numbers
Henrik Bengtsson
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2010/09/26
Re: [aroma.affymetrix] Help needed regarding GCRMA normalization of exon arrays using aroma.affymetrix.....
Henrik Bengtsson
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2010/09/26
Re: [aroma.affymetrix] Multiple NUSE and RLE Plots?
Henrik Bengtsson
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2010/09/24
[aroma.affymetrix] Help needed regarding GCRMA normalization of exon arrays using aroma.affymetrix.....
Prithish Banerjee
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2010/09/24
[aroma.affymetrix] Multiple NUSE and RLE Plots?
Vonn
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2010/09/24
Re: [aroma.affymetrix] Why are there duplicate positions for chromosome 14 on the Affy 6.0 array?
Henrik Bengtsson
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2010/09/24
Re: [aroma.affymetrix] Relative Copy Number Analysis
Henrik Bengtsson
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2010/09/24
[aroma.affymetrix] Why are there duplicate positions for chromosome 14 on the Affy 6.0 array?
Matt
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2010/09/23
[aroma.affymetrix] Help needed regarding GCRMA normalization of exon arrays using aroma.affymetrix.....
Prithish Banerjee
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2010/09/22
[aroma.affymetrix] Relative Copy Number Analysis
Dario Strbenac
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2010/09/22
[aroma.affymetrix] Re: CbsModel
Kai
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2010/09/21
[aroma.affymetrix] Alternatives way to access the mailing list archive
Henrik Bengtsson
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2010/09/20
Re: [aroma.affymetrix] CbsModel
Henrik Bengtsson
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2010/09/18
Re: [aroma.affymetrix] Re: Custom Canine SNP (DogSty06m520431); problem with chr24-39
Henrik Bengtsson
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2010/09/18
Re: [aroma.affymetrix] How long should it take to run CRMAv2 on 270 samples for Affymetrix SNP 6.0 arrays
Henrik Bengtsson
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2010/09/18
Re: [aroma.affymetrix] Exception: Cannot fit normalization function to enzyme, because there are no (finite) data points that are unique to this enzyme: 1
Henrik Bengtsson
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2010/09/18
[aroma.affymetrix] Exception: Cannot fit normalization function to enzyme, because there are no (finite) data points that are unique to this enzyme: 1
Leif Schauser
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2010/09/17
[aroma.affymetrix] How long should it take to run CRMAv2 on 270 samples for Affymetrix SNP 6.0 arrays
Matt
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2010/09/15
[aroma.affymetrix] CbsModel
Kai
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2010/09/13
[aroma.affymetrix] unusual copy number analysis result - split copy numbers
Patrick
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2010/09/08
[aroma.affymetrix] Re: GLAD not producing output
Gene
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2010/09/08
Re: [aroma.affymetrix] GLAD not producing output
Henrik Bengtsson
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2010/09/07
Re: [aroma.affymetrix] GLAD not producing output
Pierre Neuvial
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2010/09/07
[aroma.affymetrix] GLAD not producing output
Gene
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2010/09/07
Re: [aroma.affymetrix] Problems extracting intensity values after normalization
vwalter
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2010/09/06
Re: [aroma.affymetrix] Problems extracting intensity values after normalization
Henrik Bengtsson
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2010/09/06
Re: [aroma.affymetrix] MSCN and ChromosomeExplorer
Henrik Bengtsson
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2010/09/05
Re: [aroma.affymetrix] FIRMAGene: No write permission for directory: probeData/tissues,RBC/HuGene-1_0-st-v1
Henrik Bengtsson
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2010/09/05
Re: [aroma.affymetrix] FIRMAGene: No write permission for directory: probeData/tissues,RBC/HuGene-1_0-st-v1
chen chao
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2010/09/04
Re: [aroma.affymetrix] FIRMAGene: No write permission for directory: probeData/tissues,RBC/HuGene-1_0-st-v1
Henrik Bengtsson
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2010/09/03
[aroma.affymetrix] MSCN and ChromosomeExplorer
Kai
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2010/09/03
[aroma.affymetrix] Problems extracting intensity values after normalization
Vonn
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2010/09/03
Re: [aroma.affymetrix] FIRMAGene: No write permission for directory: probeData/tissues,RBC/HuGene-1_0-st-v1
chen chao
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2010/09/03
Re: [aroma.affymetrix] FIRMAGene: No write permission for directory: probeData/tissues,RBC/HuGene-1_0-st-v1
Henrik Bengtsson
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2010/09/03
[aroma.affymetrix] FIRMAGene: No write permission for directory: probeData/tissues,RBC/HuGene-1_0-st-v1
AlexChen
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2010/09/02
Re: [aroma.affymetrix] Problems updating aroma.affymetrix
Matt
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2010/09/01
Re: [aroma.affymetrix] Problems updating aroma.affymetrix
Henrik Bengtsson
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2010/09/01
Re: [aroma.affymetrix] Problems updating aroma.affymetrix
Mark Robinson
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2010/09/01
Re: [aroma.affymetrix] Problems updating aroma.affymetrix
Pierre Neuvial
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2010/09/01
Re: [aroma.affymetrix] Problems updating aroma.affymetrix
Pierre Neuvial
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2010/09/01
[aroma.affymetrix] Problems updating aroma.affymetrix
Matt
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2010/08/30
[aroma.affymetrix] Re: run FirmaGene on exon array ?
Mark Robinson
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2010/08/30
[aroma.affymetrix] Re: run FirmaGene on exon array ?
Qicheng Ma
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2010/08/29
[aroma.affymetrix] Re: run FirmaGene on exon array ?
Mark Robinson
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2010/08/26
[aroma.affymetrix] run FirmaGene on exon array ?
Qicheng Ma
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2010/08/25
[aroma.affymetrix] Re: Another "Exception: Cannot fit target function to enzyme"
Gene
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2010/08/24
[aroma.affymetrix] Re: Custom Canine SNP (DogSty06m520431); problem with chr24-39
Denis
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2010/08/24
[aroma.affymetrix] Re: Custom Canine SNP (DogSty06m520431); problem with chr24-39
Denis
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2010/08/23
Re: [aroma.affymetrix] Re: Another "Exception: Cannot fit target function to enzyme"
Henrik Bengtsson
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2010/08/23
[aroma.affymetrix] Re: Another "Exception: Cannot fit target function to enzyme"
Gene
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2010/08/23
Re: [aroma.affymetrix] Custom Canine SNP (DogSty06m520431); problem with chr24-39
Henrik Bengtsson
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2010/08/23
[aroma.affymetrix] Custom Canine SNP (DogSty06m520431); problem with chr24-39
Denis
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2010/08/19
Re: [aroma.affymetrix] Errors with getChipEffectSet(plm)
Henrik Bengtsson
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2010/08/19
Re: [aroma.affymetrix] Analysis of GenomeWideSNP6.0 data
Henrik Bengtsson
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2010/08/19
Re: [aroma.affymetrix] Re: Another "Exception: Cannot fit target function to enzyme"
Henrik Bengtsson
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2010/08/18
Re: [aroma.affymetrix] Analysis of GenomeWideSNP6.0 data
Ajanthah Sangaralingam
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2010/08/17
[aroma.affymetrix] Re: Another "Exception: Cannot fit target function to enzyme"
Gene
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2010/08/16
Re: [aroma.affymetrix] Another "Exception: Cannot fit target function to enzyme"
Pierre Neuvial
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2010/08/16
[aroma.affymetrix] Another "Exception: Cannot fit target function to enzyme"
Gene
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2010/08/12
[aroma.affymetrix] Re: firmaGeneScores Pvalue (or Qvalue)?
Mark Robinson
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2010/08/11
[aroma.affymetrix] firmaGeneScores Pvalue (or Qvalue)?
Qicheng Ma
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2010/08/10
[aroma.affymetrix] Errors with getChipEffectSet(plm)
Vonn
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2010/08/09
[aroma.affymetrix] Re: sorry, I can not reproduce the table 2 in FIRMAGene paper
Mark Robinson
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2010/08/09
[aroma.affymetrix] sorry, I can not reproduce the table 2 in FIRMAGene paper
qichengm
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2010/08/07
[aroma.affymetrix] Re: Help with custom CDF file for Mouse Exon Array and FIRMA package
Elizabeth Purdom
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2010/08/06
[aroma.affymetrix] Re: non finite values in FIRMA results
Adi Tarca
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2010/08/05
Re: [aroma.affymetrix] Re: non finite values in FIRMA results
Mark Robinson
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2010/08/05
Re: [aroma.affymetrix] Re: Mo-Ex 1.0st array Analysis using aroma.affymetrix and FIRMA model
Mark Robinson
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2010/08/05
Re: [aroma.affymetrix] Error need help(CdfFile$byChipType)
ashwin Vishnuvardhana
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2010/08/05
Re: [aroma.affymetrix] Error need help(CdfFile$byChipType)
Henrik Bengtsson
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2010/08/05
Re: [aroma.affymetrix] Error need help(CdfFile$byChipType)
ashwin Vishnuvardhana
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2010/08/05
Re: [aroma.affymetrix] Error need help(CdfFile$byChipType)
ashwin Vishnuvardhana
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2010/08/05
Re: [aroma.affymetrix] Error need help(CdfFile$byChipType)
Henrik Bengtsson
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2010/08/05
Re: [aroma.affymetrix] Error need help(CdfFile$byChipType)
ashwin Vishnuvardhana
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2010/08/05
Re: [aroma.affymetrix] Cannot fit normalization function to enzyme, because there are no (finite) data points that are unique to this enzyme: 1
Pierre Neuvial
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2010/08/05
[aroma.affymetrix] Cannot fit normalization function to enzyme, because there are no (finite) data points that are unique to this enzyme: 1
gouxiongpapa
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2010/08/05
Re: [aroma.affymetrix] Problems with Affymetrix 250K Sty2 arrays after CRMAv2 analysis
Henrik Bengtsson
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2010/08/04
Re: [aroma.affymetrix] Analysis of GenomeWideSNP6.0 data
Pierre Neuvial
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2010/08/04
[aroma.affymetrix] Re: Problem with GLAD on linux cluster
cstratowa
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2010/08/04
[aroma.affymetrix] Re: Problem with GLAD on linux cluster
Henrik Bengtsson
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2010/08/04
[aroma.affymetrix] Re: Problem with GLAD on linux cluster
cstratowa
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2010/08/03
Re: [aroma.affymetrix] Error need help(CdfFile$byChipType)
Pierre Neuvial
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2010/08/03
[aroma.affymetrix] Error need help(CdfFile$byChipType)
vish
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2010/08/03
Re: [aroma.affymetrix] Analysis of GenomeWideSNP6.0 data
Ajanthah Sangaralingam
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2010/08/02
[aroma.affymetrix] Re: non finite values in FIRMA results
Adi Tarca
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2010/08/02
Re: [aroma.affymetrix] non finite values in FIRMA results
Henrik Bengtsson
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2010/08/02
Re: [aroma.affymetrix] Re: Mo-Ex 1.0st array Analysis using aroma.affymetrix and FIRMA model
Henrik Bengtsson
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2010/08/02
[aroma.affymetrix] non finite values in FIRMA results
Adi Tarca
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2010/08/02
[aroma.affymetrix] Re: Mo-Ex 1.0st array Analysis using aroma.affymetrix and FIRMA model
Sundar
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2010/08/02
Re: [aroma.affymetrix] Batch Adjusted RMA data
Henrik Bengtsson
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2010/08/02
Re: [aroma.affymetrix] medpolish in analyzing HuGene arrays
Henrik Bengtsson
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2010/08/02
Re: [aroma.affymetrix] Re: Problem with GLAD on linux cluster
Henrik Bengtsson
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2010/07/28
[aroma.affymetrix] aroma.affymetrix v1.7.0 released
Henrik Bengtsson
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2010/07/27
[aroma.affymetrix] Mo-Ex 1.0st array Analysis using aroma.affymetrix and FIRMA model
Sundar
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2010/07/26
[aroma.affymetrix] medpolish in analyzing HuGene arrays
Steven Bosinger
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2010/07/26
[aroma.affymetrix] Re: Problem with GLAD on linux cluster
cstratowa
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2010/07/23
[aroma.affymetrix] Batch Adjusted RMA data
Fong
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2010/07/23
[aroma.affymetrix] Re: Problem with GLAD on linux cluster
Henrik Bengtsson
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2010/07/23
[aroma.affymetrix] Re: peculiar array quality
Henrik Bengtsson
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2010/07/23
Re: [aroma.affymetrix] Re: Problem with GLAD on linux cluster
Henrik Bengtsson
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2010/07/23
Re: [aroma.affymetrix] peculiar array quality
Henrik Bengtsson
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2010/07/22
Re: [aroma.affymetrix] Firma Scores in the range of 700-1500
Mark Robinson
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2010/07/22
[aroma.affymetrix] Re: Problem with GLAD on linux cluster
cstratowa
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2010/07/21
[aroma.affymetrix] Re: Problem with GLAD on linux cluster
Henrik Bengtsson
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2010/07/21
[aroma.affymetrix] peculiar array quality
Matt Wilkerson
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2010/07/21
[aroma.affymetrix] Firma Scores in the range of 700-1500
gaurav bhatti
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2010/07/21
Re: [aroma.affymetrix] Re: Problem with GLAD on linux cluster
Henrik Bengtsson
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2010/07/21
[aroma.affymetrix] Re: Problem with GLAD on linux cluster
cstratowa
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2010/07/21
[aroma.affymetrix] Re: Reference dataset for ACNE
Henrik Bengtsson
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2010/07/21
[aroma.affymetrix] Re: Reference dataset for ACNE
Henrik Bengtsson
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2010/07/21
Re: [aroma.affymetrix] Reference dataset for ACNE
Henrik Bengtsson
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2010/07/21
Re: [aroma.affymetrix] Reference dataset for ACNE
Henrik Bengtsson
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2010/07/21
Re: [aroma.affymetrix] writeDataFrame in CRMAv2 and ACNE
Henrik Bengtsson
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2010/07/20
Re: [aroma.affymetrix] writeDataFrame in CRMAv2 and ACNE
Henrik Bengtsson
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2010/07/20
Re: [aroma.affymetrix] writeDataFrame in CRMAv2 and ACNE
Henrik Bengtsson
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2010/07/20
[aroma.affymetrix] writeDataFrame in CRMAv2 and ACNE
Nicolas Vergne
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2010/07/20
[aroma.affymetrix] Reference dataset for ACNE
Nicolas Vergne
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2010/07/19
Re: Exporting summarized signals to be used by Affymetrix GTC? (Was: Re: [aroma.affymetrix] Re: CRMA v2 errors)
Henrik Bengtsson
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2010/07/19
Re: [aroma.affymetrix] Problem with extracting subset of samples for 500K
Henrik Bengtsson
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2010/07/19
[aroma.affymetrix] IGNORE: Mail test #1
Henrik Bengtsson
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2010/07/18
Re: Exporting summarized signals to be used by Affymetrix GTC? (Was: Re: [aroma.affymetrix] Re: CRMA v2 errors)
Henrik Bengtsson