Dear Group, I have a slight problem. I am working with single haploid cells and genotyping it on human SNP6.0 arrays. I can run the files and easily make the analysis till copy number variation. But I do not know whether I am reading a single allele from my sample or a heterozygous allele. As a control I am having an array from same individual with diploid state. Is there any way to depict the alleles calls or the ploidy state from the genotype. I tried CNV but different SNPs give different value some shows haploid while others show diploid. Is there a way to summarize everything and get to know the ploidy number? Sincerely Tarang
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