Dear all A query re samples to use for a reference pool - the bigger the better? I am not so certain. I have looked at a number of similar samples repeatedly, and as these samples have arrived over a period of time, so my pool of normals has grown. I have re-run a few analyses altering the pool size, and the results are not always cleaner. My pool samples have all been run at the same place, however they are very heterogeneous. Does anyone have any thoughts/opinions on this? Any suggested QC/plots to try and select the best reference samples from my pool of ~100? [N.B. these are 6.0 chips].
with thanks, Lavinia Gordon. --~--~---------~--~----~------------~-------~--~----~ When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/aroma-affymetrix?hl=en -~----------~----~----~----~------~----~------~--~---
