Hi, I have run the complete "Total Copy Number Analysis" tutorial and it works fine. http://groups.google.com/group/aroma-affymetrix/web/total-copy-number-analysis-6-0
The raw CNs extracted as result of rawCNs <- as.data.frame(rawCNs), have a chromosomal location and a copy number value. What I need is the starting and ending location on the chromosomes for each copy number value(i.e. starting base pair location and ending base pair location). I have searched and tried for several hours, but wasn't able to find. Ex: output from print(rawCNs) is: x cn 55765 0.7987 789799 -0.80980 What I want is start end cn 55765 55800 0.7987 789799 790011 -0.80980 Thanks in advance, Suleiman --~--~---------~--~----~------------~-------~--~----~ When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/aroma-affymetrix?hl=en -~----------~----~----~----~------~----~------~--~---
