Hi,
I'm having problems installing FIRMAGene on my computer either with the
install.packages command in R or with the R Package Installer. I keep
getting the warning message that FIRMAGene is not available. Is there
another location to get this package? Thanks.
R version 2.12.0 (2010-10-15)
Platform: i386-apple-darwin9.8.0/i386 (32-bit)
When I try to install by using the install.packages command, it says the
package is unavailable:
> install.packages("FIRMAGene", repos="http://R-Forge.R-project.org";)
Warning: unable to access index for repository
http://R-Forge.R-project.org/bin/macosx/leopard/contrib/2.12
Warning message:
In getDependencies(pkgs, dependencies, available, lib) :
package ‘FIRMAGene’ is not available
If I try to install the package using the R Package Installer, I get the
following warnings:
> install.packages("FIRMAGene", repos="http://R-Forge.R-project.org";)
Warning: unable to access index for repository
http://R-Forge.R-project.org/bin/macosx/leopard/contrib/2.12
Warning message:
In getDependencies(pkgs, dependencies, available, lib) :
package ‘FIRMAGene’ is not available
trying URL 'http://R-Forge.R-project.org/src/contrib/FIRMAGene_0.9.5.tar.gz'
Content type 'application/x-gzip' length 9223 bytes
opened URL
==================================================
downloaded 9223 bytes
* installing *source* package ‘FIRMAGene’ ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99
-I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/i386
-I/usr/local/include -fPIC -g -O2 -c init.c -o init.o
gcc -arch i386 -std=gnu99
-I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/i386
-I/usr/local/include -fPIC -g -O2 -c mps.c -o mps.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names
-undefined dynamic_lookup -single_module -multiply_defined suppress
-L/usr/local/lib -o FIRMAGene.so init.o mps.o
-F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
-Wl,CoreFoundation
/usr/bin/libtool: for architecture ppc7400 object:
/usr/lib/gcc/i686-apple-darwin8/4.0.1/../../../libSystem.dylib malformed
object (unknown load command 7)
/usr/bin/libtool: for architecture: (null) file: -lSystem is not an object
file (not allowed in a library)
/usr/bin/libtool: for architecture ppc64 object:
/usr/lib/gcc/i686-apple-darwin8/4.0.1/../../../libSystem.dylib malformed
object (unknown load command 7)
make: *** [FIRMAGene.so] Error 1
ERROR: compilation failed for package ‘FIRMAGene’
* removing
‘/Library/Frameworks/R.framework/Versions/2.12/Resources/library/FIRMAGene’
The downloaded packages are in
‘/private/var/folders/pQ/pQBxScbYEACZOn2BER6xiE+++TI/-Tmp-/RtmpzEsz6S/downloaded_packages’
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