Hi I am trying to implement the Vignette: Human exon array analysis posted at http://www.aroma-project.org/node/37.
However when i got to the section discussing how to browse spatial false-colored images of the residuals, ae <- ArrayExplorer(rs) setColorMaps(ae, c("log2,log2neg,rainbow", "log2,log2pos,rainbow")) process(ae, interleaved="auto", verbose=verbose) i got the error the EBImage package not loaded. So i went and installed the EBImage package from bioconductors and now i get an error stating that i should not have installed this package. Any help resolving this is very much appreciated? > sessionInfo() R version 2.10.1 (2009-12-14) x86_64-pc-linux-gnu locale: [1] LC_CTYPE=en_AU.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_AU.UTF-8 LC_COLLATE=en_AU.UTF-8 [5] LC_MONETARY=C LC_MESSAGES=en_AU.UTF-8 [7] LC_PAPER=en_AU.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tools_2.10.1 > traceback() 3: stop(gettextf("no methods for '%s' and no documentation for it as a function", f), domain = NA) 2: .helpForCall(topicExpr, parent.frame()) 1: `?`(EBImage()) Regards Elsa Chacko PhD Student Macquarie University. -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/