Hi,
aroma.affymetrix v2.3.0 and friends have been released. Update by running:
source("http://aroma-project.org/hbLite.R";);
hbInstall("aroma.affymetrix");
The is a rather small release - the main update is that now all
aroma.* packages have a namespace. This should not affect an end user
much, except that it should improve the stability of the code, and
lower the risk for unforeseeable bugs. Other than that, there are few
new methods available (see below). I still strongly recommend an
update.
/Henrik
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Updates to aroma.affymetrix
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Version: 2.3.0 [2011-10-28]
o Added a namespace to the package, which will be more or less
a requirement starting with R v2.14.0.
o Added BioConductor package 'AffymetrixDataTestFiles' to the list
of suggested package, just to remove one R CMD check "NOTE".
Version: 2.2.3 [2011-09-29]
o Added more system tests.
Version: 2.2.2 [2011-09-17]
o Added writeCdfByExcludingCells() for AffymetrixCdfFile.
Version: 2.2.1 [2011-09-11]
o Added createExonByTranscriptCdf() for creating exon-by-transcript CDFs.
This methods was adapted from the createTranscriptCDF(), which was
previously provided online.
o Added a build script for createExonByTranscriptCdf() on HuEx-1_0-st-v2.
o Added getHeaderAttributes() for AffymetrixNetAffxCsvFile which is
used by new getGenomeBuild(), getNetAffxBuild() and getNetAffxDate().
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Updates to aroma.core
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Version: 2.3.0 [2011-10-28]
o Added a namespace to the package, which will be more or less
a requirement starting with R v2.14.0.
Version: 2.2.2 [2011-09-29]
o Added alpha version of the AromaRepository class.
Version: 2.2.1 [2011-09-24]
o readHeader(), readRawFooter() and writeRawFooter() of
AromaTabularBinaryFile would try to read non-signed 4-byte integers,
which is not supported and would instead be read as signed integers.
From R v2.13.1 this would generated warnings.
--
When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report the output of sessionInfo() and
traceback(), and 3) to post a complete code example.
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