More or less the complete script follows..
dsList <- doASCRMAv2(csR, plm="RmaCnPlm", verbose=verbose);
print(dsList);
cmt <- CalMaTeCalibration(dsList);
print(cmt);
sampleName <- "2_S7_CD15_SNP6";
patientIDs <- c(1,2,4);
sampleTypes <- c("tumor", "normal");
pids <- rep(patientIDs, each=length(sampleTypes));
types <- rep(sampleTypes, times=length(patientIDs));
mat <- cbind(names, pids, types);
str(mat);
idxsN <- which(mat[, "types"] == "normal");
cmtN <- CalMaTeCalibration(dsList, tags=c("*", "normalReferences"),
references=idxsN);
print(cmtN);
On Thursday, June 14, 2012 2:31:02 PM UTC-4, Henrik Bengtsson wrote:
>
>
> > Hi All,
> > I have my test run almost completed and at the step
> > dsCNList <- process(cmtN, verbose=verbose);
> > I get the following memory error
> > Error: cannot allocate vector of size 95.4 Mb
> >
> > I am on Windows7, 32bit and have many Gs of storage.
> >
> > Any ideas for how to deal with this?
>
> My best guess now is that you have done lots of other things in the
> same R session before doing your aroma analysis, but it is impossible
> to tell based on that single line of code. So, please post (1) your
> complete script (at least up to the point where you get the error),
> (2) the output of print(cmtN), (3) the output of sessionInfo() after
> you get the error.
>
> /Henrik
>
> > thanks, M
> >
> > --
> > When reporting problems on aroma.affymetrix, make sure 1) to run the
> latest
> > version of the package, 2) to report the output of sessionInfo() and
> > traceback(), and 3) to post a complete code example.
> >
> >
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> http://www.aroma-project.org/forum/
>
--
When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report the output of sessionInfo() and
traceback(), and 3) to post a complete code example.
You received this message because you are subscribed to the Google Groups
"aroma.affymetrix" group with website http://www.aroma-project.org/.
To post to this group, send email to [email protected]
To unsubscribe and other options, go to http://www.aroma-project.org/forum/
