I am trying to install aroma.affymetrix on a linux cluster.
I run source("http://aroma-project.org/hbLite.R";) and
hbInstall("aroma.affymetrix")
The program attempts to install/upgrade R.methodsS3 but this doesn't seem
to work. A lot of output is produced as R tries to install all of the
various dependencies so it is hard to tell what is going wrong but there
seems to be a problem with lazy loading.
I frequently see the message
Error in R.methodsS3:::export(...tmpfcn) <- TRUE : invalid function in
complex assignment
Error : unable to load R code in package R.methodsS3
Error : lazy loading failed for package R.methodsS3
In the end a large number of warnings are produced which say that
installation of the R.methodsS3, R.oo, R.utils, R.cache, R.filesets,
R.devices, R.rsp, matrixStats,aroma.core, aroma.light have non-zero exit
status. I assume this means these packages are not installed.
Any thoughts on how to fix these problems?
Thanks,
Mike
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