I am trying to run segmentByPairedPSCBS on my illumina 1M dataset. This R function require CT parameter - which is a A numeric vector of J tumor total copy number (TCN) ratios in [0,+Inf). I am unable to get anything apart from BAF and LRR from Genomestudio output. How I can estimate CT from my data ?
Thanks Reed -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
