Hi again. On Fri, Nov 30, 2012 at 12:44 PM, Sam Danziger <sam.danzi...@gmail.com> wrote: > I've been trying to use FIRMA analysis > (http://www.aroma-project.org/vignettes/FIRMA-HumanExonArrayAnalysis) on my > mouse arrays ( > Mouse Exon 1.0 ST Array - > http://aroma-project.org/chipTypes/MoEx-1_0-st-v1). > > It looks like the scripts have completed successfully, but I have a few > questions:
[snip] > 3) How can I update the .cdf files? > I would like to use the brainarray .cdf files > (http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download.asp) > because they are regularly updated. However, (based on the results of the > FIRMA run) their .cdf files do not have the correct exon/gene annotations. > I can figure out which exons should be paired with which genes from annmap, > but I cannot figure out how to store this information in the .cdf file. Are you saying you wish to create a customize version of their custom CDFs where you update the unit ("transcript") and unit group ("exon") names? /Henrik > > Thank you, > -Sam > > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the latest > version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to http://www.aroma-project.org/forum/ -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/
