Thanks Henrik for all your help
Yes, I'm using 0.32.5 and I called > fit <- segmentByPairedPSCBS(X, knownSegments=knownSegments, seed=4874, >verbose=-9, tbn=FALSE, avgDH="median") Cheers, Oscar On 14/02/2013 10:04, "aroma-affymetrix@googlegroups.com" <aroma-affymetrix@googlegroups.com> wrote: > > Today's Topic Summary >Group: >http://groups.google.com/group/aroma-affymetrix/topics ><http://groups.google.com/group/aroma-affymetrix/topics> > >* PSCBS and callNTCN() (Was: Re: [aroma.affymetrix] Digest for >aroma-affymetrix@googlegroups.com - 2 Messages in 1 Topic) ><#group_thread_0> [1 Update] > > > PSCBS and callNTCN() (Was: Re: [aroma.affymetrix] Digest for >aroma-affymetrix@googlegroups.com - 2 Messages in 1 Topic) ><http://groups.google.com/group/aroma-affymetrix/t/5a9fab682eebac1e> > >Henrik Bengtsson <henrik.bengts...@aroma-project.org> > Feb 13 01:48PM -0800 > > > > >Hi Oscar, > > > > > >I'm rather swamped right now, but just a few quick comments. Calling > > >so called copy-neutral segments via callNTCN() is a rather and > > >somewhat experimental method (I should state in the vignette). In > > >other words, it has not undergone equally much rigorous validation as > > >the other callers. Having said this, this caller is very of interest > > >to us (and also right now through several projects), so any feedback > > >is very useful. I will try to have a look at your data that you've > > >sent me offline, but I cannot promise when. From the error message, > > >it could simply be a bug rather than a problem with the > > >estimators/data. > > > > > >About the avgDH="median". Exactly what commands did you call? Also, > > >you're using PSCBS v0.32.5, correct? > > > > > >/Henrik > > > > > > > > > > > >You received this message because you are subscribed to the Google Group >aroma-affymetrix. >You can >post via email <mailto:aroma-affymetrix@googlegroups.com>. >To unsubscribe from this group, >send <mailto:aroma-affymetrix+unsubscr...@googlegroups.com> an empty >message. >For more options, >visit <http://groups.google.com/group/aroma-affymetrix/topics> this group. > >-- >-- >When reporting problems on aroma.affymetrix, make sure 1) to run the >latest version of the package, 2) to report the output of sessionInfo() >and traceback(), and 3) to post a complete code example. > > >You received this message because you are subscribed to the Google Groups >"aroma.affymetrix" group with website >http://www.aroma-project.org/. >To post to this group, send email to aroma-affymetrix@googlegroups.com >To unsubscribe and other options, go to >http://www.aroma-project.org/forum/ <http://www.aroma-project.org/forum/> > >--- >You received this message because you are subscribed to the Google Groups >"aroma.affymetrix" group. >To unsubscribe from this group and stop receiving emails from it, send an >email to aroma-affymetrix+unsubscr...@googlegroups.com. >For more options, visit https://groups.google.com/groups/opt_out. > > > -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/groups/opt_out.
