I can reproduce this - very odd. I'll investigate a fix it. In the
meanwhile, install the aroma.* 2.8.0 versions via CRAN, e.g.
install.packages("aroma.core", repos="@CRAN@")
install.packages("aroma.affymetrix", repos="@CRAN@")
(Add repos="@CRAN@" to make sure not to install from other repositories.)
Thanks for the report,
Henrik
On Sat, Mar 23, 2013 at 10:16 AM, Uma Shankavaram
<uma.shankava...@gmail.com> wrote:
> Hello,
>
> I am using aroma.affymetrix_2.8.2 package using Windows version of R to
> process 4 SNP6.0 cel files.
> I am getting an error when trying to use this function.
>
> e.g.
> ae <- ArrayExplorer(csR)
> setColorMaps(ae, "sqrt,yellow")
> process(ae, verbose = log)
> ...
> Error: could not find function "process"
>
> Can anyone know why there is a problem?
>
> My R session info is:
>> sessionInfo()
> R version 2.15.1 (2012-06-22)
> Platform: x86_64-pc-mingw32/x64 (64-bit)
>
> locale:
> [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United
> States.1252 LC_MONETARY=English_United States.1252
> [4] LC_NUMERIC=C LC_TIME=English_United
> States.1252
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> other attached packages:
> [1] aroma.affymetrix_2.8.2 affxparser_1.30.2 aroma.apd_0.2.3
> R.huge_0.4.2 aroma.light_1.24.0
> [6] aroma.core_2.8.2 matrixStats_0.6.2 R.rsp_0.8.2
> R.devices_2.1.3 R.cache_0.6.8
> [11] R.filesets_2.0.1 R.utils_1.19.5 R.oo_1.13.0
> R.methodsS3_1.4.2
>
> loaded via a namespace (and not attached):
> [1] digest_0.6.3 PSCBS_0.30.0 tools_2.15.1
>
>
> Thanks
>
> Uma
>
> --
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--
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When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report the output of sessionInfo() and
traceback(), and 3) to post a complete code example.
You received this message because you are subscribed to the Google Groups
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