Hi aroma.affymetrix developers, Before I start the analysis, I just want to confirm the CN analysis of 500K arrays with doCRMAv2, as I did not find a Vig specific about it.
What I understand is, 1. run 250K_Nsp dsC_Nsp=doCRMAv2(test,cdf="Nsp",verbose=verbose) 2. run 250_Sty dsC_Sty=doCRMAv2(test,cdf="Sty",verbose=verbose) 3. merge them together by "aroma.cn" Would you mind telling me if I am correct with analysis? I also have SNP5.0 to merge, so should I merge 3 arrays at one time or, merge 500K first and then SNP5.0? Thank you very much, Wei NCI/NIH -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to firstname.lastname@example.org To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/groups/opt_out.