Hi.

On Wed, May 29, 2013 at 3:12 AM, shangzhong Li <shangzhong0...@gmail.com> wrote:
> I am trying to analyse GSE 30321 datasets in R. However it has 295 samples
> in two files (one has 255 and another has 40).  They have same platform.
> gset <- getGEO('GSE30321',GSEMatrix =TRUE)
> gives gset two elements. Does anyone know how to combine the two files into
> one and give gset only one element with 295 samples? thank you.

I guess you are referring to getGEO() of the GEOquery Bioconductor
package, which is completely unrelated to the aroma.affymetrix
package.  Please report your question on the Bioconductor mailing
list.

/Henrik

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When reporting problems on aroma.affymetrix, make sure 1) to run the latest 
version of the package, 2) to report the output of sessionInfo() and 
traceback(), and 3) to post a complete code example.


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