Hi,
aroma.affymetrix v2.11.0 and friends has been released and is
available on CRAN (where the package is hosted). Update by:
source("http://aroma-project.org/hbLite.R";);
hbInstall("aroma.affymetrix");
This release is mainly about internal cleanups and adjusting to recent
changes in R 3.0.x, but as usual I always recommend to you to update.
Cheers,
Henrik
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Updates to aroma.affymetrix
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Version: 2.11.1 [2013-10-17]
o DOCUMENTATION: Minor tweaks to the help for the doNNN() methods.
Version: 2.11.0 [2013-10-17]
o Updated package dependences.
o Package now requires R (>= 2.15.0) [and Bioc (>= 2.10.0)].
Version: 2.10.3 [2013-10-07]
o CLEANUP: No longer need to attach R.utils for backward compatibility.
o CLEANUP: Package no longer apply downloaded package patches.
o CLEANUP: Deprecated patch() for AromaAffymetrix.
o CLEANUP: Now explicitly importing only what is needed in NAMESPACE.
o CLEANUP: No longer uses ':::' for accessing 'oligo' functions.
o Updated package dependences.
Version: 2.10.2 [2013-09-28]
o Now the 'aroma.affymetrix' Package object is also available when the
package is only loaded (but not attached).
o Updated package dependences.
Version: 2.10.1 [2013-08-21]
o Now explicitly importing R.filesets and aroma.core in NAMESPACE.
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Updates to aroma.core
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Version: 2.11.0 [2013-10-16]
o CLEANUP: Minor adjustments of NAMESPACE imports.
o CLEANUP: Dropped colMedians() for AromaTabularBinaryFile.
If needed, there is always colStats().
o Updated package dependencies.
o Now package requires R (>= 2.15.0) [and Bioc (>= 2.10.0)].
Version: 2.10.6 [2013-10-07]
o CLEANUP: Now explicitly importing only what is needed in NAMESPACE.
o BACKWARD COMPATIBILITY: For R (< 3.0.2) only the maximum of 500
S3 methods are declared in NAMESPACE.
o Updated package dependencies.
Version: 2.10.5 [2013-10-03]
o Added argument 'chromosomes' to ChromosomalModel() and setChromosomes()
for the same class. If not specified, the default is as before to infer
the set of chromosomes from the UGP files.
o HELP: Now the sanity-check error that CopyNumberChromosomalModel throws
gives a more informative error message suggesting to adjust argument
'maxNAFraction' when setting up the model.
Version: 2.10.4 [2013-09-28]
o Now the 'aroma.core' Package object is also available when the
package is only loaded (but not attached).
o CLEANUP: Now only importing the exact set of methods needed from
the 'R.utils' package.
Version: 2.10.3 [2013-09-20]
o CLEANUP: Now only importing the exact set of methods needed from
the 'matrixStats' package.
o ROBUSTNESS: Forgot to import R.methodsS3::appendVarArgs().
o Updated package dependencies.
Version: 2.10.2 [2013-09-11]
o CLEANUP: Backward-compatibility code for obsolete EBImage was
no longer needed.
o CLEANUP: Updated package dependencies.
Version: 2.10.1 [2013-08-12]
o BUG FIX: exportAromaUnitPscnBinarySet() for AromaUnitTotalCnBinarySet
would throw an error on "unknown argument 'names' to indexOf()".
--
--
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traceback(), and 3) to post a complete code example.
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