Hi there, I'm new to processing Affy SNP6 chips and so am mainly experimenting with different methods to date. I ran CRMAv2 and followed steps 1-4 from the vignette (http://aroma-project.org/vignettes/CRMAv2). For step 5, I want to do a paired analysis.
Previously I've used DNAcopy to perform CBS for other array types, and would like to follow a similar procedure, which includes smoothing prior to segmentation. Is this possible using the aroma.affymetrix package? So far I've followed the vignette for paired CNA analysis ( http://aroma-project.org/vignettes/pairedTotalCopyNumberAnalysis) but haven't seen any options for smoothing. thank you very much, emilie -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to email@example.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/groups/opt_out.