Hi, Did you check the website of the MBNI folks? AFAIK Manhong Dai et al offer remapped (custom) CDFs for this array type (and many others) in various flavors (e.g. based on ENSEMBL gene/transcript, NCBI Entrez Gene / RefSeq, etc.) http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download.asp#v17
HTH, Guido --------------------------------------------------------- Guido Hooiveld, PhD Nutrition, Metabolism & Genomics Group Division of Human Nutrition Wageningen University Biotechnion, Bomenweg 2 NL-6703 HD Wageningen the Netherlands tel: (+)31 317 485788 fax: (+)31 317 483342 email: guido.hooiv...@wur.nl internet: http://nutrigene.4t.com http://scholar.google.com/citations?user=qFHaMnoAAAAJ http://www.researcherid.com/rid/F-4912-2010 From: aroma-affymetrix@googlegroups.com [mailto:aroma-affymetrix@googlegroups.com] On Behalf Of BJ Chen Sent: Friday, January 03, 2014 23:48 To: aroma-affymetrix@googlegroups.com Subject: [aroma.affymetrix] gene-centric CDF for HT HG U133A arrays (TCGA GBM data) Hi, I am wondering if anyone can point me to somewhere I can download the gene-centric CDF for HT-HG-U133A arrays. I have searched around, but the only CDF I can find is from affymetrix website. I would like to process some arrays to get gene-level data. I followed the script example (http://www.aroma-project.org/vignettes/GeneSTArrayAnalysis) to extract the data, but the data is still at probe level. I appreciate anyone's help. Thanks, BJ -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com<mailto:aroma-affymetrix@googlegroups.com> To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com<mailto:aroma-affymetrix+unsubscr...@googlegroups.com>. For more options, visit https://groups.google.com/groups/opt_out. -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/groups/opt_out.
