Does anybody know of any good tools for constructing a cdf file from affy pgf and clf files? It appears that such tools exist: http://www.aroma-project.org/node/40 The problem is the following 3 links in above address are broken: 1) http://bcgc.lbl.gov/cdfFiles/flat2Cdf.R Flat2cdf.R (constructs a cdf file from a "flat file") 2) http://bcgc.lbl.gov/cdfFiles/combineProbeInfo.pl combineProbeInfo.pl (combines pgf and clf files into single flat file with each row containing most of the information needed for each probe) 3) http://bcgc.lbl.gov/cdfFiles/addGeneId.pl addGeneId.pl (takes output of previous pl script and merge it with probeset-gene map to generate flat file needed by flat2cdf) Any help greatly appreciated. Thanks, Guilherme Rocha -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to firstname.lastname@example.org To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/groups/opt_out.