Hi, In the vignette about "How to: Calculate total copy number ratios from from total (non-polymorphic) signals", Henrik mentioned that the output of doCRMAv2() and doASCRMAv2()are not *CN ratios *and to obtain *total CNs* (TCN), we need to calculate the ratios for these signals relative to corresponding signals of a reference. But when I ran exportTotalCnRatioSet(dsT, ref=dsN), there were error messages saying that file already exists ("File already exists: rawCnData/dataset1,ACC,ra,-XY,BPN,-XY,AVG,A+B,FLN,-XY/CytoScanHD_Array/010213_01_T,ref=010213_01_N,log2ratio,total.asb.tmp ").
Br, C.Y -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to firstname.lastname@example.org To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.