Hi Henrik , I have really strange result from PSCBS. What I did were doCRMAv2 ->extractPSCNArray->compute copy number -> dropSegmentationOutliers -> segmentByPairedPSCBS-> plotTracks.
But I found that one of my sample does not have any minor/major CN nor DH. See attachment. I have checked BAF values. There are non-NA values. what do you think there is going on? Br, C.Y -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to email@example.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.