Hi. See Section 'Aroma-specific annotation files' at http://aroma-project.org/howtos/ for "how tos" on updating UGP and UFL. Those subpages have straightforward/detailed instructions how to import from NetAffx files. Please consider sharing your generated files; we're happy to host.
Cheers, Henrik On Tue, Mar 10, 2015 at 5:53 AM, Francois <francois.faut...@gmail.com> wrote: > Hello Henrik, > > What fields should be updated in annotation files for SNP 500K from the > latest version supported by NetAffyx (GRCh37) to current version (GRCh38), > what columns exactly are used by the package for each annotation file? Would > updating genomic positions with latest dbSNP in the annot.csv and probe_tab > be sufficient? > > Thank you, > > François > > -- > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the latest > version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to http://www.aroma-project.org/forum/ > > --- > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to aroma-affymetrix+unsubscr...@googlegroups.com. > For more options, visit https://groups.google.com/d/optout. -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.
