Hi.

See Section 'Aroma-specific annotation files' at
http://aroma-project.org/howtos/ for "how tos" on updating UGP and
UFL.  Those subpages have straightforward/detailed instructions how to
import from NetAffx files.   Please consider sharing your generated
files; we're happy to host.

Cheers,

Henrik

On Tue, Mar 10, 2015 at 5:53 AM, Francois <francois.faut...@gmail.com> wrote:
> Hello Henrik,
>
> What fields should be updated in annotation files for SNP 500K from the
> latest version supported by NetAffyx (GRCh37) to current version (GRCh38),
> what columns exactly are used by the package for each annotation file? Would
> updating genomic positions with latest dbSNP in the annot.csv and probe_tab
> be sufficient?
>
> Thank you,
>
> Fran├žois
>
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When reporting problems on aroma.affymetrix, make sure 1) to run the latest 
version of the package, 2) to report the output of sessionInfo() and 
traceback(), and 3) to post a complete code example.


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