HI, there, I am a newbie to aroma.affymetrix. What I want to do is this, I want to calculate the raw copy number and log2 ratio of a probe. I used doASCRMAv2 to normalize a single array's intensity values. Then after that, I think I am supposed to use extractTotalAndFreqB to extract total intensities and B-allele freq. The document I had missing one step, I think, how to transform the output of doASCRMAv2 to the input of extractTotalAndFreqB. So anyone can help how to do it?
BTW, I have searched internet for a good aroma.affymetrix tutorial, however, without any good luck. If anyone can help to point to a direction, it is very appreciated. Thanks. George -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.
