Hi,
the fit() method
[http://www.aroma-project.org/vignettes/FIRMA-HumanExonArrayAnalysis/]
takes argument 'units', which effectively defaults to units =
seq_len(nbrOfUnits(cdf)). If you wish to fit only a subset of the
units, you can do something like
fit(plm, units=c(10:50, 540:800))
If you're using doFIRMA(), it is unfortunately not possible to specify
'units' this way.
Hope this helps
Henrik
On Wed, Aug 12, 2015 at 2:25 PM, Marijke Van Moerbeke
<vanmoerbekemari...@gmail.com> wrote:
> Hi
>
> I noticed that the FIRMA procedure is implemented to work on the raw .CEL
> files.
> Is there a way to select only a specific set of units (By this I mean exons)
> on which FIRMA needs to be performed? And by this to leave out units that
> are for example not informative?
>
> Thanks!
>
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