Hi, the fit() method [http://www.aroma-project.org/vignettes/FIRMA-HumanExonArrayAnalysis/] takes argument 'units', which effectively defaults to units = seq_len(nbrOfUnits(cdf)). If you wish to fit only a subset of the units, you can do something like
fit(plm, units=c(10:50, 540:800)) If you're using doFIRMA(), it is unfortunately not possible to specify 'units' this way. Hope this helps Henrik On Wed, Aug 12, 2015 at 2:25 PM, Marijke Van Moerbeke <vanmoerbekemari...@gmail.com> wrote: > Hi > > I noticed that the FIRMA procedure is implemented to work on the raw .CEL > files. > Is there a way to select only a specific set of units (By this I mean exons) > on which FIRMA needs to be performed? And by this to leave out units that > are for example not informative? > > Thanks! > > -- > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the latest > version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to http://www.aroma-project.org/forum/ > > --- > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to aroma-affymetrix+unsubscr...@googlegroups.com. > For more options, visit https://groups.google.com/d/optout. -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.