Hi, just exclude argument 'cells', i.e.
data <- extractMatrix(cs) This will reads all cells/probes. Henrik On Mar 2, 2016 05:47, "sanj" <sood.sanj...@gmail.com> wrote: > Hi, > > I was wondering if its possible to extract probe level intensities from > cel files without depending on a particular CDF file? > > At the moment I am using: > > df <- readDataFrame(getCdf(cs), verbose=-80) > raw<-extractMatrix(cs,cells=df$cell,verbose=verbose) > > But its dependent on the CDF file thus we will only have probes that are > included within the CDF. However we want the intensities for all > probes irrespective of the CDF used. > > Is this possible in aroma.affymetrix? > > Regards, > Sanj > > > > > -- > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the > latest version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to > http://www.aroma-project.org/forum/ > > --- > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to aroma-affymetrix+unsubscr...@googlegroups.com. > For more options, visit https://groups.google.com/d/optout. > -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.
