Hello, I have a few hundred paired samples that I'd like to run through Paired PSCBS. The example at http://www.aroma-project.org/vignettes/PairedPSCBS-lowlevel/ is very clear on how to set up this protocol for one pair of samples. In order to do a test run, I used a for loop to run Paired PSCBS on each pair one at a time.
Is there another way to do this? For example, I have two vectors with file names TumorSamples <- c("Sample1_T.CEL", "Sample2_T.CEL", "Sample3_T.CEL") NormalSamples <- c("Sample1_N.CEL", "Sample2_N.CEL", "Sample3_N.CEL") instead of pair <- c(T="GSM318736", N="GSM318737") within a for loop, I ran TumorNormalpair <- c(T=dsT[i], N=dsN[i]) Thanks, Gaius -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to email@example.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.