Hi Henrik,
Very similar to the issue above, I have checked the file size, which is
fine. However this is the error I still encounter, any thoughts?
Thanks
ck
> list.files(path)
[1] "GenomeWideSNP_6,Full,na33,hg19,dbsnp137,HB20140118.ufl"
[2] "GenomeWideSNP_6,Full,na33,hg19,dbsnp137,HB20140118.ugp"
[3] "GenomeWideSNP_6,Full.cdf"
[4] "GenomeWideSNP_6,HB20080710.acs"
> gi<-getGenomeInformation(cdf)
[2018-05-30 16:14:36] Exception: Failed to retrieve genome information for
this chip type: GenomeWideSNP_6
at #02. getGenomeInformation.AffymetrixCdfFile(cdf)
- getGenomeInformation.AffymetrixCdfFile() is in environment
'aroma.affymetrix'
at #01. getGenomeInformation(cdf)
- getGenomeInformation() is in environment 'aroma.affymetrix'
Error: Failed to retrieve genome information for this chip type:
GenomeWideSNP_6
├── annotationData
│ └── chipTypes
│ └── GenomeWideSNP_6
│ ├── GenomeWideSNP_6,Full,na33,hg19,dbsnp137,HB20140118.ufl
│ ├── GenomeWideSNP_6,Full,na33,hg19,dbsnp137,HB20140118.ugp
│ ├── GenomeWideSNP_6,Full.cdf
│ └── GenomeWideSNP_6,HB20080710.acs
On Tuesday, 10 April 2012 09:19:31 UTC+1, Frederic Foucault wrote:
>
> Hi Henrik, Hi Pierre,
> Thanks a lot for your precious helps.
>
> Henrik , you are right: two files were not ofthe correct size:
> "GenomeWIDE....ufl" and "GenomeWIDE....ugp". I downloaded them again from
> aroma.org
> Now, i will do the complete run of ACNE test of the GSE14996 dataset.
> Other questions will come...
>
> Here is my R session info
>
> R version 2.14.0 (2011-10-31)
> Platform: x86_64-pc-mingw32/x64 (64-bit)
>
> locale:
> [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United
> States.1252
> [3] LC_MONETARY=English_United States.1252
> LC_NUMERIC=C
> [5] LC_TIME=English_United States.1252
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> other attached packages:
> [1] ACNE_0.5.0 MASS_7.3-17 aroma.affymetrix_2.5.0
> [4] affxparser_1.26.4 aroma.apd_0.2.0 R.huge_0.3.0
> [7] aroma.core_2.5.0 aroma.light_1.22.0 R.rsp_0.7.5
> [10] R.cache_0.6.1 R.filesets_1.1.5 digest_0.5.2
> [13] R.utils_1.12.1 matrixStats_0.4.4 R.oo_1.9.3
> [16] R.methodsS3_1.2.2
>
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