In message <p05200f0fba51ffea1b75@[129.78.152.117]> you wrote: >Am not sure where in the run_blastp script to put the paths for these >files. My first attempts generate error messages.
I have got these scripts working on a couple of machines, by editing the file to give the full path to the executable, e.g. EXEC="/usr/software/netblast/blastcl3" but adding the full path to the database in the dialog box within artemis (set blastp options). You can test that the script works by running: ./run_blastp input_file output_file /path/to/database Milo. -- Milo Thurston, CEH Oxford, Mansfield Road, Oxford, OX1 3SR. http://www.nox.ac.uk http://www.bioinf.ceh.ac.uk/lab/
