Oh, so easy! Thank you for a great hint!
On Wednesday, January 22, 2003, at 11:32 PM, Julian Parkhill wrote:
Alex Zelensky wrote:
Hi all,
Is it possible to transpose all features of an entry? I have selected
a
subsequence of a large scaffold and annotated it as a separate entry.
Now I want to add the annotation made on the subsequence to the
scaffold. For this I need to convert subsequence coordinates into
scaffold coordinates. Is there a way to do it with Artemis?
Arteis doesn't have a method of doing this directly, however one quick
and dirty method would be this:
Make a copy of the subsequence and features.
Open the scaffold and highlight the bases up to the first base of the
subsequence. Write out the selected bases in raw format.
In the subsequence, select base 1, chose "Edit" "Insert bases from
file"
and chose the file written above.
Artemis will adjust the positions of all the features to take into
account the extra DNA. Write out the features to a new file.
Open the new feature file in the scaffold entry.
Julian.
--
Dr. Julian Parkhill The Sanger Institute
mailto:[EMAIL PROTECTED] Wellcome Trust Genome Campus
Tel: +44(0)1223 494975, Fax: +44(0)1223 494919 Hinxton
http://www.sanger.ac.uk/Projects/Microbes Cambridge
http://www.sanger.ac.uk/Users/parkhill CB10 1SA, UK
