To add a new plot to Artemis you'll need to add a new class to the diana.sequence package and edit the BasePlotGroup constructor.
Thanks, seems to work nicely. Just to summarise for anybody else that is interested:
1) setenv CLASSPATH /usr/local/artemis, or whatever
2) put newplot.java in diana/plot, whatever your new plot codes for
3) javac newplot.java
4) open diana/components/BasePlotGroup.java
5) cp BasePlotGroup.java BasePlotGroup.java.bak (just in case of typing calamity)
6) at line 146, add the following 2 lines
addAlgorithm (new newplot (forward_strand)); // or whatever your new plot is called
addAlgorithm (new newplot (reverse_strand));
7) javac BasePlotGroup.java 8) restart artemis, and new plot should appear in Graph menu
Cheers Derek
