Hello Artemis Users! In my department we do sequence analysis and use Artemis a lot. Many users here might be interested in the webserver I have made for analyzing sequences for my department.
The server makes many popular tools for analysis easily accessible by a web interface that would otherwise require working on the command line and programming on a unix machine. The server can analyze your sequence with glimmer and tRNAscanner. It can search for homologies to already known proteins from the blast database NR and do many other cool things. The results are given in the EMBL format that can be read and edited with artemis by human annotators. There is a manual for the annotation suite: http://nbc11.biologie.uni-kl.de/annotation_suite_tutorial/ Glimmer with RBSFinder and TransTerm are here: http://nbc11.biologie.uni-kl.de/glimmer2.02/ tRNAscanner: http://nbc11.biologie.uni-kl.de/tRNAscanner/ I hope that the programs will be useful to some of you. Comments and suggestions are welcome. Bye, Michael. P.S.: I have seen that someone asked for a way to convert Artemis output for the NCBI submission script. I have recently reinvented the wheel and made a webservice for it: http://nbc11.biologie.uni-kl.de/sequin/index_sequin.shtml Unlike the other programs I mentioned, this has not been thoroughly tested yet. -- ----------------------------------------------------------- Dipl.-Inform. Michael Nuhn Bioinformatik Zentrum für Nanostrukturtechnologie und Molekularbiologische Technologie +49 (0)631 - 205 4334 [EMAIL PROTECTED] http://www.nuhn.net ----------------------------------------------------------- _______________________________________________ Artemis-users mailing list [email protected] http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
