Melanie,
Does anyone know a way of taking data for a genome annotated in Artemis and writing out as a table, so for each feature there is a column for /note, /locus_tag, /label, /gene etc. There only seems to be option of writing features out in either Embl or Genbank
One thing you may not realise is that MULTIPLE qualifiers of the same name are valid in EMBL/Genbank/DDJB style feature tables.
So you will need to consider how you would expect your column-based output to appear in a situation like the one below:
FT CDS complement(1..99) FT /product="xxxx" FT /function="yyyy" FT /note="no ortholog found" FT /note="obvious RBS site" FT /EC_number="1.2.3.4" FT /EC_number="2.3.4.5" -- Torsten Seemann Victorian Bioinformatics Consortium, Monash University, Australia http://www.vicbioinformatics.com/ Phone: +61 3 9905 9010 _______________________________________________ Artemis-users mailing list [email protected] http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
