|
Many thanks to all who replied to my
posting. The problem was solved, following advice of Tim Carver and David Bauer,
by deleting features at the ends of the sequence which referenced other
sequences e.g. FT
gene
complement(AC012146.25.1.171309:6053..52695) Regards, Lesley Nicolson From:
Lesley Nicolson [mailto:[EMAIL PROTECTED] Hi – I would really appreciate help with a problem
importing files from ensembl export view
(http://www.ensembl.org/Homo_sapiens/exportview). I’ve exported human chromosomal sequence (500Mb) from
ensembl export view, with gene, vega and genscan features, as a flat file
(saved as text file). In notepad this looks comparable to files that I can open
in artemis (apart from the XX blank lines – but it makes no difference
removing these): example: ID 17 standard; DNA; HTG;
500000 BP. XX AC chromosome:NCBI36:17:10050467:10550466:1 XX SV chromosome:NCBI36:17:10050467:10550466:1 XX DT 21-JUN-2006 XX DE Homo sapiens chromosome 17 NCBI36 partial
sequence 10050467..10550466 DE annotated by Ensembl XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata;
Vertebrata; Euteleostomi; Mammalia; Regards, Lesley Nicolson Div I&I, Level 4 |
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