On Thu, 31 Aug 2006 11:34:09 -0400, Andrew Stewart wrote: > I'm looking to use Artemis as an interactive front end to a BioSQL or > Bio::DB::GFF database. I'm aware that Tim Carver is developing > interaction with Chado, but I was wondering if anyone is aware of any > other efforts to connect Artemis up with other schemas. I have dug > up some references to such being done in old mail-list archives I > googled.
Some work has been done on Artemis to allow it to use BioJava as a back-end. As far as I know it's read-only and isn't well tested yet. I believe BioJava can connect to BioSQL databases so it may be possible to use BioJava as a bridge between Artemis and BioSQL As an example, I think this works in the current Artemis: art -biojava org.biojava.bio.seq.io.EmblLikeFormat foo.embl Kim. _______________________________________________ Artemis-users mailing list [email protected] http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
