Dear all,
....ok...I need an help!
I have an artemis v.7 working on a FedoraCore3 machine, perfectly
integrated with the blast-2.2.15, so that the blast programs listed in
the run menu are working fine using swissprot, nr, nt, and so on...
Now, I'm trying to work with artemis v.8 on a Ubuntu machine, but I
didn't succed with its integration with blast-2.2.15 (note that the
stand alone blast and the artemis itself are working!)
On this machine I have copied the same configuration (blast, artemis,
artemis/etc in my PATH and BLASTDB environment variable) but the run_
commands from the run menu are still not working....
Usually, for e.g., I get this error:
ERROR running blastx:
=================
[blastall] ERROR: No argument given for database
I get the same error even if I run the run_ script from the terminal.
I also tried to specify the database location in the artemis/etc/option :
feature_dna_programs = \
tblastx /usr/BioSW/blast-2.2.15/db \
blastn /usr/BioSW/blast-2.2.15/db \
blastx /usr/BioSW/blast-2.2.15/db \
fastx %uniprot \
clustalx DNA
but with no success again...
It's days I'm working on it......What's wrong?
Cheers
Stefano
--
Dr. Stefano Ghignone
Istituto per la Protezione delle Piante, Sez. Torino - CNR
c/o Dpt. Plant Biology, University of Turin
V.le P.A. Mattioli, 25
I-10125 Turin
Italy
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