Hi Andrea What you get in the FASTA header are:
systematic name Label Product (if any) Location You should be able to alter what it takes as the first 2 (systematic name and label) in version 9 of Artemis by going to File -> Preferences and changing the defaults for "Feature Display Labels" and "Systematic Name Labels". You can add qualifiers from these lists by editing the drop down list on the right and clicking the ADD button. You can also delete qualifiers from the list. It then takes the first qualifier in each list to be the 'systematic name' and 'label' in the output. I'm not sure this does covers everything you want written out but I hope this helps. Regards Tim On 27/4/07 15:42, "Andrea Azcarate" <[EMAIL PROTECTED]> wrote: >>> >>> Good morning, >>> >>> I could not find the answer to my problem in the forum. >>> >>> Below is a copy of my question: >>> >>> Hello, I am using Artemis to annotate a microbial sequence, and I need >>>> to select all the CDS containing an specific feature (SignalP) >>> and >>>> write them into a file. The problem is that when I select signalP >>>> and write the selected features, Artemis only writes the feature >>>> and the location in the genome, but the CDS information (ORF >>>> number, complete aa seq, other features). Is there a way to do >>>> this? >>>> >>>> Thank you very much in advance, >>>> >>>> Andrea Azcarate >>> >>> --- >>> M. Andrea Azcarate Peril, Ph. D. >>> Research Scientist >>> Food Science Department >>> North Carolina State University >>> Box 7624 >>> Raleigh, NC 27695 >>> Ph 919 515 3552 >>> >>> "The greatness of a nation and its moral >>> progress can be judged by the way its animals >>> are treated" - Mahatma Ghandi >>> >>> ----- Original Message ----- >>> From: "Paul Bevan via RT" <[EMAIL PROTECTED]> >>> To: <[EMAIL PROTECTED]> >>> Sent: Friday, April 27, 2007 3:26 AM >>> Subject: [Sanger #29341] Resolved: SANGER website feedback >>> >>> >>>> According to our records, your request has been resolved. >>>> >>>> If you have any further questions or concerns, you can re-open this >>> case >>>> simply by responding to this message. >>>> >>>> Otherwise, please do not respond to this message. >>>> >>>> Resolution: >>>> >>> >> ---------------------------------------------------------------------------- >>>> >>>> Thank you for your correspondence >>>> >>> >>> >>> >>> >> >> > > > _______________________________________________ > Artemis-users mailing list > [email protected] > http://lists.sanger.ac.uk/mailman/listinfo/artemis-users _______________________________________________ Artemis-users mailing list [email protected] http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
