Hi,
I am a great fan of Artemis, having used it since I started working in a
lab in May. I think I may have discovered a bug though (in version 9) -
Artemis is not properly loading some mRNA transcripts in GenBank format
from Entrez Gene such as the one at
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=NM_001353.5
The "opened" sequence begins 'nrnmarynnnnnrnnsnnnsnannnnnnnnnnnrnmaryn'.
After removing the following section from the GenBank entry, the file
opens properly:
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-623 BC040210.1 660-1282
624-628 CB119749.1 440-444
629-1179 BC040210.1 1288-1838
1180-1384 M86609.1 1003-1207
There is something about this first line which makes Artemis to try to
treat it as bases - I noticed the following correspondence between the
section I removed and the gobbledegook:
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN
: :::: : : : :: : :::: : :: : : :::: : ::
nrnmarynnnnnrnnsnnnsnannnnnnnnnnnrnmarynndnntnnnnrnnrnmarynsnan
I hope someone can fix this. I looked at the source code, but don't know
where to begin!
Best wishes,
Rupert Millard
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