Mike,
For most of the graphs, the line should be the whole genome average
value for that plot.
The only exception that I know of is the Correlation Score graph.
This plots a score (in arbitrary units) for the correlation between
the amino acid usage of the window and the general amino acid usage
of proteins (calculated from EMBL some time ago). Here the line
represents the "ideal" correlation for a true coding sequence.
Julian.
On 18 Jan 2008, at 17:32, Michael Herron wrote:
All,
Some of the graph types have a light gray line drawn across the
plot with a numerical value on the right side. What is this line
and how is it computed?
Thanks,
Mike
Michael J. Herron, U of MN, Dept. of Entomology
[EMAIL PROTECTED]
612-624-3688 (office) 612-625-5299 (FAX)
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Julian Parkhill
Head of the Pathogen Sequencing Unit
and Director of Sequencing,
The Sanger Institute,
Wellcome Trust Genome Campus,
Hinxton, Cambridge, CB10 1SA, UK
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