Hi Scott If you are wanting to see ACT in action with data from a chado database, there is a database available to try here:
http://www.sanger.ac.uk/Software/Artemis/databases/ The comparison data is not loaded into the database but is available from the above web-site as a file download. Regards Tim On 3/9/08 19:35, "Kim Rutherford" <[EMAIL PROTECTED]> wrote: > On Wed, 3 Sep 2008 14:19:17 -0400, Scott Cain wrote: > >> Hi all, >> I wanted to try Artemis out, particularly it's synteny functionality. >> Is there a set of sample data somewhere that I could use to get >> started? > > Hi. For the synteny functionality you probably want to look at ACT: > http://www.sanger.ac.uk/Software/ACT/ > > There are some example files mentioned on this page: > http://www.sanger.ac.uk/Software/ACT/Examples/ > > Double ACT may be of use too, if your input sequences aren't too big: > http://www.hpa-bioinfotools.org.uk/pise/double_act.html > > There is some information in the manual about how to generate your own > comparison files: > http://www.sanger.ac.uk/Software/ACT/manual/start.html#COMPARISON-RUN > > Kim. > > _______________________________________________ > Artemis-users mailing list > [email protected] > http://lists.sanger.ac.uk/mailman/listinfo/artemis-users _______________________________________________ Artemis-users mailing list [email protected] http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
